Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04989 ATGTGCTACGGTTCGAATATAAAACCCTCTCAAACTAATTTGATTAGAGATCATGAAGATGGAAGACAAGAACAACTGCATCTTGAGATGTCTGATTTGCTTCTGTTTTCAGCCACAGATGATGTAATTGCTTTCAGAGAGGCCGTTGAAAAAAGCGATCATGATGTCGATGAAGTAGGGTTGTGGTATGGAAGGAGGATTGGCTCAAAGGAAACGGGATATGAAGAGAGGACACCTCTTATGATTGCTTCTTTATTTGGAAGCAAAGCGGTATTGTCTTATATACTTCAAACTGGTCGTGTCGATGTTAACAAAGCGTGTGGGTCGGATAGGGCTACTGCTCTTCATTGCGCTGTATTTGGTTGTTCTGCTGCTTCTGCCGAGGTTATCAAGCTTTTGCTTGATGCATCTGCAGATGTTGGTTCTGTTGATGCGAACGGTAACCGGTGCAGTGACTTGATTGTCTGGATGTCTAATAGTATCTCTGGTTCAAGGAAGAGGAAACTACAAGCATTACTAGAAGGTATCGATGATGTTGATGAAGACGATGGTTTTCTTAAGGAATTAGGTTTCCAAATGGAGAAGCAGCAAGAAGATATCGGTACACCTCGAATCAATAAGAAAGATTATTCGATTGATCTGTCCCTACCCGACATAAATAATGGGATATATATTACAGATGAATTTAGGATGTTTATTTTCAAAGTGAAACCTTGTTCAAGGGCTTATACTCATGATTGGACCGAGTGTCCCTTTGTTCATCCAGGGGAAAACGCAAGGCGCCGTGATCCGACAACATACCAATACACCTGTGTCCCTTGTCCTGAGTTTCGGAAGGGATCATGCAGTAAAGGGGATGGTTGTGAATATGCACATGGTATTTTTGAGTGCTGGCTTCATCCTGCTCAATACAGAACAAGGATTTGCAAGGATGAGACCCAATGCACCCGAAGAGTATGCTTTTTCGCACATAAACCTGAGGAGCTTCGCCCATTGTATGCTTCTACTGGCTCTGCTTTGCCTTCACCTATATCATATTCAAATTCACCTACTGCTTCTTCAATGGATTCTTTCACATTGAGCTCTCCGTCCAGTTCGATACAATCCACGTCGACACCGCCTTTGACTCCATCTGCAGCGTCTTCTCCTGCAGGTGGAACCATGTGGCCGACTCACTCTCATGCTGCGGTCCCTACGCTTCAGATGCCGAGAAGAAGATTGAAAACTGCATTGAATGCTAGAGATAATACTGAATTTCTCGAACTTGAAAATCGCCTTATGCAGAAGCTAATGCTTGAAGAGAATACAGGTCTTTCATCCCCTTCAAACTGGCTTGCAGCTGTGAATCCTGCTAACCTAGAAGACATTCTCGATTCTCAGATACAATCTCCAACATCGACTCATGTGCATCCGAATGTGACTCAGCAACTTTGGGGCTTTTCTTCTGACCTTACCAATTCAAATGTGATTGGTTCACCACAGATCACTATTAATTCGTCTTGGAATTCGAAAAATGATGCCTTGGCAAAGCGGAGCCAGAGCTTTATCGAATGCAGCAGCATGGCGAGCTTTAGTTCTGAGCTTCCTTCTGCTACCTCAGTTGCTATGGAGCCATATAGTAACTTCTCATGTTGGGGCTCCCCTGATGGAAAATTAGACTGGTCCATCCGTGGCAATGAACTGAATAAGATGAAAAAGTCTTACTCTTTCGGCTTTCGAAACCAACATAGCAATTCAACAATGGTTGCTCAAAATGCTGATGATCGAGATTTATTACTAAGTCAGGAATCATGGGTTAATTCACTAGTGAAGGATGCACCAACAGTGCAATTGGATCAATATTGTGAAGTGTGA 1854 0.4299 MCYGSNIKPSQTNLIRDHEDGRQEQLHLEMSDLLLFSATDDVIAFREAVEKSDHDVDEVGLWYGRRIGSKETGYEERTPLMIASLFGSKAVLSYILQTGRVDVNKACGSDRATALHCAVFGCSAASAEVIKLLLDASADVGSVDANGNRCSDLIVWMSNSISGSRKRKLQALLEGIDDVDEDDGFLKELGFQMEKQQEDIGTPRINKKDYSIDLSLPDINNGIYITDEFRMFIFKVKPCSRAYTHDWTECPFVHPGENARRRDPTTYQYTCVPCPEFRKGSCSKGDGCEYAHGIFECWLHPAQYRTRICKDETQCTRRVCFFAHKPEELRPLYASTGSALPSPISYSNSPTASSMDSFTLSSPSSSIQSTSTPPLTPSAASSPAGGTMWPTHSHAAVPTLQMPRRRLKTALNARDNTEFLELENRLMQKLMLEENTGLSSPSNWLAAVNPANLEDILDSQIQSPTSTHVHPNVTQQLWGFSSDLTNSNVIGSPQITINSSWNSKNDALAKRSQSFIECSSMASFSSELPSATSVAMEPYSNFSCWGSPDGKLDWSIRGNELNKMKKSYSFGFRNQHSNSTMVAQNADDRDLLLSQESWVNSLVKDAPTVQLDQYCEV 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04989 617 FunFam Zinc finger CCCH domain-containing protein 269 331 - -
Vivi3g04989 617 SUPERFAMILY Ankyrin repeat 45 157 IPR036770 -
Vivi3g04989 617 PANTHER UNKEMPT FAMILY MEMBER 36 606 IPR045234 -
Vivi3g04989 617 ProSiteProfiles Zinc finger C3H1-type profile. 268 295 IPR000571 GO:0046872
Vivi3g04989 617 Gene3D - 30 180 IPR036770 -
Vivi3g04989 617 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Vivi3g04989 617 MobiDBLite consensus disorder prediction 355 402 - -
Vivi3g04989 617 MobiDBLite consensus disorder prediction 355 388 - -
Vivi3g04989 617 Gene3D - 270 331 - -
Vivi3g04989 617 SMART ANK_2a 75 105 IPR002110 GO:0005515
Vivi3g04989 617 SMART ANK_2a 110 142 IPR002110 GO:0005515
Vivi3g04989 617 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Vivi3g04989 617 SMART c3hfinal6 303 326 IPR000571 GO:0046872
Vivi3g04989 617 Pfam Ankyrin repeats (3 copies) 68 142 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04989 Vivi-Chr3 96318978 96321149 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04989 30 571 C2H2 Transcription Factor Family AT5G12850 39.935 3.35e-127 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi3g04989 Ank_2 3.2e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04989 - - psat:127084564 905.975