Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04985 ATGTGCAACGGTTCGAGTAGAAAACCCTCTCAAACTGGTTTGCTTAGGGACCATGAATATGGAAGACAAGAAGAACTGCATCATAAGATGTCTGATTTGCTTCTGTTTTCAGCCACAGATGATGTAATTGCTTTCAAAGAGGCCGTTGAAAAAAGCAATCATGATGTCGACGAAGTAGGGTTGTGGTATGGAAGGAGGATTGGCTCAAAGGAAACGGGATATGAAGAGAGGACACCTCTTATGATTGCTTCTTTATTTGGATGCAAGGCTGTATTGTCTTATATACTTCAAACTGGTCGTGTCGATGTTAACAAAGCGTGTGGGTCGGATAGGGCTACTGCTCTTCATTGTGCTGTTTCTGGTTGCTCTGCTGCTTCTGCTGAGGTTATCAAGCTTTTGCTTGATGCATCTGCAGATGTTGGTTCTGTTGATGCCTACGGTAACCGGTGCAGTGACTTGATTGTCAAGATGCCTAATAGTGTCTCCAGTTCAAGGAAGAGGCAACTACACACCATACTAGAAGGTACTGATAATATTGATGATGACGATGATTTCCTTAAGGAAGTAGGTTTCCAAATGGAGAAGCAGCAACAAGATATCGGTACACCTCGAATCGAGAAAAAAGATTATCCAATTGATCTATCCTTGGCCGACATAAATAATGGAATATATAGTACAGATGAGTTTAGGATGTATATATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCGGGGGAAAACGCAAGGCGCCGTGATCCGACAATATATCAATACACTTGTGTCCCTTGTCCCGAGTTTCGGAAGGGATCATGCAATAAAGGGGATGTTTGTGAATATGCACATGGTATTTTTGAGTGCTGGCTTCATCCTGCTCAATACAGAACAAGGATTTGCAAGGATGAGACCCAATGCACCCGAAGAGTCTGCTTTTTCGCTCATAAACCCGAGGAGCTTCGCCCATTGTATGCTTCTACTGGTTCTGCTTTGCCTTCACCTATATCATATTCAAATTCACCTACTGCTTCCTCAATGGATTCTTTCACGTTGAGCTCTCCGTCCAGTTCGATACACTCCATGTCGACATCGCCTTTGACTCCATCTGCAGCGTCTTCTCCTGCAGGTGGAACCATGTGGCCGACTCAGTCTCACGCCGCAGTCCCTACACTTCAGATGCCGAGAAGCAGAATGAAAGCTACATTAAACGCTAGAGATAATACTGAATTTCTTGAACTTGAAAATCGTCTTATGCAGAAGCTAATGATCGAAGAGATGACAGGTCTTTCATTCCCTTCAAATAAGCTTGCAGGTGTGAATTCTGCTAACCTCGAAGACGTTCTCGATTCTCAGATACAATTTCCAACATCAACTCAGGTGCATCCGAATGTGACTCAGCAACTTTGGGGCTTTTCTTCTGACCTTACCAATTCAAATGTGATCGGTTCACCACCGGTCACTCTTGATTCGTCTTTGAATTCGAAAATTGATGCCTTGGCACAGCGGTGCCAGAGCTTTATCGAACGCAGCAGCATGGAGAGCTTTAGTTCTAAGCTTCCTTCTGCTACCTCAGTTTCTATGGAGCCATATACTAACTTCTCGGGTTGGAGCTCCCCTGATGGAAAATTAGACTGGTCCATCCGTGGCAATGAACTGAATAAGATGAAAAAGTCTTATTCTTTCGGCTTTCGAAACCAACTTAGCAATTCAACAATGGTTGCACAAAATGATGATGATCAAAATATATTAATAAGCCAGGAATCATGGGTTAATTCACTTGTGAAGGATGCACCAACAGTACAATTAGATCCATATTGTGTTGAAGTGTAA 1857 0.4308 MCNGSSRKPSQTGLLRDHEYGRQEELHHKMSDLLLFSATDDVIAFKEAVEKSNHDVDEVGLWYGRRIGSKETGYEERTPLMIASLFGCKAVLSYILQTGRVDVNKACGSDRATALHCAVSGCSAASAEVIKLLLDASADVGSVDAYGNRCSDLIVKMPNSVSSSRKRQLHTILEGTDNIDDDDDFLKEVGFQMEKQQQDIGTPRIEKKDYPIDLSLADINNGIYSTDEFRMYIFKVKPCSRAYSHDWTECPFVHPGENARRRDPTIYQYTCVPCPEFRKGSCNKGDVCEYAHGIFECWLHPAQYRTRICKDETQCTRRVCFFAHKPEELRPLYASTGSALPSPISYSNSPTASSMDSFTLSSPSSSIHSMSTSPLTPSAASSPAGGTMWPTQSHAAVPTLQMPRSRMKATLNARDNTEFLELENRLMQKLMIEEMTGLSFPSNKLAGVNSANLEDVLDSQIQFPTSTQVHPNVTQQLWGFSSDLTNSNVIGSPPVTLDSSLNSKIDALAQRCQSFIERSSMESFSSKLPSATSVSMEPYTNFSGWSSPDGKLDWSIRGNELNKMKKSYSFGFRNQLSNSTMVAQNDDDQNILISQESWVNSLVKDAPTVQLDPYCVEV 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04985 618 SMART ANK_2a 110 142 IPR002110 GO:0005515
Vivi3g04985 618 SMART ANK_2a 75 105 IPR002110 GO:0005515
Vivi3g04985 618 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Vivi3g04985 618 SMART c3hfinal6 303 326 IPR000571 GO:0046872
Vivi3g04985 618 Gene3D - 268 331 - -
Vivi3g04985 618 MobiDBLite consensus disorder prediction 366 388 - -
Vivi3g04985 618 PANTHER UNKEMPT FAMILY MEMBER 36 606 IPR045234 -
Vivi3g04985 618 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Vivi3g04985 618 Pfam Ankyrin repeats (3 copies) 68 142 IPR002110 GO:0005515
Vivi3g04985 618 Gene3D - 27 179 IPR036770 -
Vivi3g04985 618 FunFam Zinc finger CCCH domain-containing protein 66 226 294 - -
Vivi3g04985 618 ProSiteProfiles Zinc finger C3H1-type profile. 268 295 IPR000571 GO:0046872
Vivi3g04985 618 SUPERFAMILY Ankyrin repeat 44 157 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04985 Vivi-Chr3 96269177 96271348 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04985 25 571 C2H2 Transcription Factor Family AT5G12850 39.870 2.67e-133 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi3g04985 Ank_2 1.9e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04985 - - psat:127084564 926.006