Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04969 ATGGAGGGTTTAGAAGATTCCAGAAGAAGCTTTAAGCGTCAATGTGAATTCCCAAAACGAAAGCTTCAAATCAATGAAAGGGTTGAGGTGAAGAGTTATGAGGAGGGTTTTCTGGGATCATGGCATCCGGGGACTGTTATTGAATGTGGGAAGCTGACGCGGCATGTTCGATATGAGAATATTTTGGATGATGATGAGTTGGATTATTCAGTGGAGGTGGTGAAGGTTTCGGATGCTTTGGAGTGTGAATTTGGTTCTCCGAGTAAATTTGCAAGGATTAGGCCGCTGCCTCCTTGGGTTGAGTTTCAAACTTGTGATGTTAAGTTTGGGCTTTGTGTTGATGTGAGTTACCGGGATGCTTGGTGGGAGGGAGTTGTGTTTGATCACTGTGAAGGAATGGAGGAGAGGAGTGTGTTTTTTCCGGATTTGGGGGATGAGATGAAGGTTGAGATTGATCAAATGCGGATTACTCAGGATTGGGATGAAGTTACGGGGGAATGGCAGCGACGAGGGGAGTGGGTGTTTCTTGAATTGATTGAGGAGTTTCAGCGGGAGTCGTATCTTGCAGTTTCAGTGAAGCAAATTTGGTATGAAGTGCGACAAAAAAAGGAATTCGCGGCTGTTGGCGATTGGACGTTGAATGTTAAGAAGGATTTGTGGAGAGATATGATAATGAAGGTGGTTGTTGACTACAAGGGTGTTACAGTAAAAGAAGTTTTCTCTACCTTGAAGCCTCAACAGCTGGACTCGGTTGGACTAATGTCTAAAGTTGATTCAAACAAGACGGTATCTGAGAAGGAAAAGTTTGAGCAGAAACAGCTTGTTGTTTTTCCGGTTGAAGAGGACTTTCCTAAGTTTCAAAATGAAGTTTCAATTGCTATTTGTTCCAAGAAAAAAAAACATAGATCTTATTCCGAAAATTGGGAACCTGTAATAGTGTCTGAAACGGAATACTGCCCCGACGCTGTTAGGCAATATGTACTTGCTTATCAGGATAGGAAGTCTGTGTTTTGGAAGGAAAAAGTGAGGAAGCATCTTGCATATCTTGGATGGAAAATTTACCGATATCGTCGTTATCTAAGGTACAGGCCACCTGATGGAATCTGTGAGAATAAATTTTACTACTCACTTATTGAAATTTGTAAAGTTATGGAATCCAGAGTGAACTCTTCCGCATCCAAAAATGATCTCGGTAACAATGGTCCTACTCCTTCCTCTATTAATGGTTATAATTTATCTATATCTTCTTCCACTCCACAATCTGAACCACCCCAAACTATTAATATAAGTGCATATCTTCCTACTCAACCTACACCATCTAAACCACCAAAACTGCCTCGACCAAGTCATGCTCCACATGTGCCTCTTAATCCATTGGAAAAGAGTCAGAATCCAGATGTATCTTCTCTAGCTGTGGTGCCTTCTTCTGTTGCGGTGGCAGATGAACTAGCTACTCCTTCAGCGGCGTATTGTCCTCAAGTCATTGTTGAATACCACAAACGTGCACTCGAGCGGAATTGGGATGATAAAAAAGAATGTATTTCGAAAATAAAAGAGCATCTCCGGAAAGAAGGATGGGTTTTAACTGGCCCGCCCCCAAAAAACAAAAGAAGGGGTATATTATATACTTCCCCGCAAAAGCGGAACTTTATCTCACTGAACAAGGTATGCGAATTCCTAATTAAGGAAAGTATTAAAAGATCATCTATTTCTGGAATTGAACCTTTAAATGCCTCAATTGTTAACGAAGAAAGTATTGATAAGGAAAGTATTCAAGGATCAACTATGTGCATTCAACCTTTTGTTAGTGATGAAATTGTTGACCAAGTACCAAGTGATGATGTATCAAGTAAAACATCACATTTTCTTCCTCATGAGACTGAGTTATACACTATAGACAGGGTTGCTACAAATAGATCAAAGCGAAAACGCGATGAATCAAGTCTAAGGGTGAGGTCAAATAAAAGAGTGCGGAAATTTTCTGTCCCTTCTCTATCACATCAGAAAGCTCTGAATGTTGTGTCTTGGTTGATAGACAGCAACGTGGTGTTACCAAGATCTAATGTTTCTTATGTAGCAAAAAGAAAGCGTGTCATGGCTTCTGGTCGAATAACTCATGATGGAATCAAATGTAAATGCTGTCATAAAATATTTAGTCTTGTTTCCTTCGAATTTCATGCTATTGGTAGTAATACCACCAGACCAAGTGCTAGTATCTTTCTGGATGATGGTAGGTCGCTCTTACAGTGCCAGATACAAATAATGCAAGATCATGTGTCAAGGGAGGCTATGGTAAAATCACAGACTCATTTGTGTCAGAGTGAAAACGACTACATTTGTTCCGTTTGCCGCAACGGGGGTGAACTTCTATTGTGTGATCGGTGTCCGTCTTCATATCATAAGACGTGTCTTGGTTTGGAGGACATCCCTGATGGTGAATGGTTTTGTCCATCATGTCTTTGCGGGATTTGCGGCCAAAGAAAATTCAATGGGGGCGGTGAGGATGAACATTTCCTTAAATGCATTCAGTGTGAACATAATTATCATGTTGCATGCCTGATAAGTAGAGACACATGTAAGTCCAGAAGTTATGCGGAAAGCCAGTTCTGCGGAAAAGACTGTGAAAAGTTATATGAAGGCCTTCAAAGAATGTTGGAAGAGCCAGTTTCAGTGGGTGTGGACGATCTAACGTGGACATTGGTGAAGTGTATCGACTCTGAGAGTTGTGATATTGATAGTAGTAAAAGTGGATTATTGGCAGAAAGTTACAGCAAACTCAACGTTGCTCTTTCTGTGATGCATGAATGTTTTGAGCCCCTAAAGGAACCCTCCTCTGGCAGAGATCTGGTTGAAGATGTTATATTCAGCCGATGGTCAGAACTTAATCGAATGAATTTCCGGGGTTTCTATACTGTACTTCTAGAGAAAGATGGAGAGCTGGTCAGTGTGGCAACTATTAGGGTCCTTGGAGATAAGGTAGCTGAAGTACCTCTTGTTGGTACCAGATTTCAATATCGTCGACATGGAATGTGCCGCATCTTAATGGATGTACTGGAAAAGAAACTCATGCAATTAGGAGTGAAGCAGCTTGTTTTGCCTGCTGTTCCTTGTGTGGTAGATACATGGATCGGTCCTTTTGGCTTTTCAAAGATGACAGAACTTGAGAGGTCAAAATTTCTGGACTATACTTTCCTAGATTTTCAGGGTACCATCATGTGCCAGAAGTTGTTGACAAAGACGCCGTCTCCTGATTCAGTTTTGCAAATAGAGTTCCAACAAAAACTCGGTGCTATCTCCGAAAGCAGTAGTGCTAATAAGTCTCCAGTATCTGAAGTGTGCCAAGCAGGAGAGATAGTTATGAAAGAAATGTCGGATACACCAATGTTAGATGCGTTTGAAGGAGAAAGCGATAATGATAATGTATCTAACGAAGCTGTTATTGACTGTGTCACCATGGCGGAGCAACCTGTTCTTGAGGATGAACAACATTGCCAGAATGGAACCTCCACTGTACAAGGCTCTTTTGAAAAATGGAAGCAACCTGTTCTTGAGGATGAACAACATTGCCAGAATGGAACCTCCACTGTACAAGGCTCTTTTGAAAAATGGAAGCAACCTGTTCTTGAGGATGAACAACATTGCCAGAATGGAACAACCTCCACTGTACAAGGCTCTTTTGAAAAATGGAAGCAACCTGTTCTTGAGGATGAACAACATTGCCAGAATGGAACCTCCACTGTACAAGGCTCTTTTGAAAAATGGAAGCAACCTGTTCTTGAGGATGAACAACATTGCCAGAATGGAACCTCCACTGTACAAGGCGCTTTTGAAAAATGGAAGCAACCTGTTCTTGAGGATGAACAACATTGCCAGAATGGAACCTCCACTGTACAAGGCTCTTTTGAAAAATGGAAGAATGTTTTGTATTATTATAGACGAAGGAAAGTGAAAAGGGTAGCATGA 3963 0.4126 MEGLEDSRRSFKRQCEFPKRKLQINERVEVKSYEEGFLGSWHPGTVIECGKLTRHVRYENILDDDELDYSVEVVKVSDALECEFGSPSKFARIRPLPPWVEFQTCDVKFGLCVDVSYRDAWWEGVVFDHCEGMEERSVFFPDLGDEMKVEIDQMRITQDWDEVTGEWQRRGEWVFLELIEEFQRESYLAVSVKQIWYEVRQKKEFAAVGDWTLNVKKDLWRDMIMKVVVDYKGVTVKEVFSTLKPQQLDSVGLMSKVDSNKTVSEKEKFEQKQLVVFPVEEDFPKFQNEVSIAICSKKKKHRSYSENWEPVIVSETEYCPDAVRQYVLAYQDRKSVFWKEKVRKHLAYLGWKIYRYRRYLRYRPPDGICENKFYYSLIEICKVMESRVNSSASKNDLGNNGPTPSSINGYNLSISSSTPQSEPPQTINISAYLPTQPTPSKPPKLPRPSHAPHVPLNPLEKSQNPDVSSLAVVPSSVAVADELATPSAAYCPQVIVEYHKRALERNWDDKKECISKIKEHLRKEGWVLTGPPPKNKRRGILYTSPQKRNFISLNKVCEFLIKESIKRSSISGIEPLNASIVNEESIDKESIQGSTMCIQPFVSDEIVDQVPSDDVSSKTSHFLPHETELYTIDRVATNRSKRKRDESSLRVRSNKRVRKFSVPSLSHQKALNVVSWLIDSNVVLPRSNVSYVAKRKRVMASGRITHDGIKCKCCHKIFSLVSFEFHAIGSNTTRPSASIFLDDGRSLLQCQIQIMQDHVSREAMVKSQTHLCQSENDYICSVCRNGGELLLCDRCPSSYHKTCLGLEDIPDGEWFCPSCLCGICGQRKFNGGGEDEHFLKCIQCEHNYHVACLISRDTCKSRSYAESQFCGKDCEKLYEGLQRMLEEPVSVGVDDLTWTLVKCIDSESCDIDSSKSGLLAESYSKLNVALSVMHECFEPLKEPSSGRDLVEDVIFSRWSELNRMNFRGFYTVLLEKDGELVSVATIRVLGDKVAEVPLVGTRFQYRRHGMCRILMDVLEKKLMQLGVKQLVLPAVPCVVDTWIGPFGFSKMTELERSKFLDYTFLDFQGTIMCQKLLTKTPSPDSVLQIEFQQKLGAISESSSANKSPVSEVCQAGEIVMKEMSDTPMLDAFEGESDNDNVSNEAVIDCVTMAEQPVLEDEQHCQNGTSTVQGSFEKWKQPVLEDEQHCQNGTSTVQGSFEKWKQPVLEDEQHCQNGTTSTVQGSFEKWKQPVLEDEQHCQNGTSTVQGSFEKWKQPVLEDEQHCQNGTSTVQGAFEKWKQPVLEDEQHCQNGTSTVQGSFEKWKNVLYYYRRRKVKRVA 1320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04969 1320 SMART ring_2 780 819 IPR001841 -
Vivi3g04969 1320 SMART ring_2 821 870 IPR001841 -
Vivi3g04969 1320 Pfam Agenet domain 26 98 IPR008395 -
Vivi3g04969 1320 SMART agenet_At_2 20 101 IPR014002 -
Vivi3g04969 1320 SMART agenet_At_2 105 162 IPR014002 -
Vivi3g04969 1320 CDD Tudor_Agenet_AtDUF_rpt1_3 22 98 - -
Vivi3g04969 1320 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 958 1056 IPR016181 -
Vivi3g04969 1320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 764 873 IPR013083 -
Vivi3g04969 1320 MobiDBLite consensus disorder prediction 436 453 - -
Vivi3g04969 1320 PANTHER PHD FINGER PROTEIN 12 492 1229 IPR042163 GO:0003714|GO:0045892
Vivi3g04969 1320 Pfam PHD-finger 779 820 IPR019787 -
Vivi3g04969 1320 SMART PHD_3 779 820 IPR001965 -
Vivi3g04969 1320 SMART PHD_3 821 875 IPR001965 -
Vivi3g04969 1320 SUPERFAMILY FYVE/PHD zinc finger 760 820 IPR011011 -
Vivi3g04969 1320 Gene3D - 926 1036 - -
Vivi3g04969 1320 MobiDBLite consensus disorder prediction 391 465 - -
Vivi3g04969 1320 CDD PHD2_CHD_II 780 819 - -
Vivi3g04969 1320 ProSiteProfiles Zinc finger PHD-type profile. 777 822 IPR019787 -
Vivi3g04969 1320 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 916 1066 IPR000182 GO:0016747
Vivi3g04969 1320 Pfam Tify domain binding domain 702 753 IPR032308 -
Vivi3g04969 1320 CDD NAT_SF 972 1032 - -
Vivi3g04969 1320 MobiDBLite consensus disorder prediction 391 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04969 Vivi-Chr3 95572099 95582173 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04969 31 381 PHD Transcription Factor Family AT5G58610 33.249 6.45e-58 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi3g04969 Agenet 8.9e-15 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04969 - - vvo:131662194 2633.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04969 3 95572099 95582173 Vivi3g04969 3 95572099 95582173 ECH
Vivi3g04969 3 95572099 95582173 Vivi7g01485 7 71074010 71080090 PCT