Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04968 ATGATGGCATTCAGAAAATGTTCTTCAAACTCGTGTAATTGGGTACCTGTAATTTTGTCTGAAACGGAATACTGCCCAGAAGCTGTTCGACAATATGCACTTACTTCTCACAACAGGAAGACTTTGAAGGAGAGAGTATGGAAGCATCTTGTATATCTTGGATGGCAAATTCACCAAGATGGTGATCATTTCAGGTACAAGCCACCCCATGGAATCTTGTGTCACAAGAAATTTTACTACTCACTTATTGAGATTTGTAAAGCTATCCAAATGGAATCCGTGGTGAACTCTTCTTCTGTTACAATGGCACATTGTCCTCAAGCCATTGTTGAATACCACAAACATGCACTCGACCCGAATTCGCGTGATAAAGGGAAACTTATTTCGAAAATAAGAAAGTATCTCGTGAACGAAGCATGGGTTTTGACTTACCCGCCACCAGGAAACAAAAGAAGCGGTGTGTCATATACTTCTCCGCAAAAACGGAAATTTAGCTCACTCAACATGGTATGCAAATTCCTAATTGAGGAAAGTGTTAGAAGTTCATCTATTTCTGGCATTCAACCTTTAAATGCCTCCTCGGTTGTTAATGAAGAAAGTGCTGATCAGGAAAGTATTCGAAAGTCACCTATGTATGGCATTCAACCTTTTGTTAGTGATGAAAGTGTTGATTGGGTACCAAGTGATGATGACTTATCAAGTAAAGCTCCAAACTTGCTTCCTCGTGAGAGCGAGTTATACACTGTAGACAGGGTTGCTACAAATAGATCAAGGCGAAAACGCGATGAATCAAGATCTCTAGCTGCGGTGCCTTCTCCTGTTGCAGTGGCGGGTGAACAAGCTACTTCTTCTGTGGCGTATTGTCCTCAAGCCGTTGTTGAATATCATAAACATGCACTCGACCCGAATTGGGGTGATAAAAGTGAACTTATTTCGAAAATAAGAGAGCATCTCGTGAAAGAAGGATGGGTTTTAACTGACCCGCCGCTAGAAAAAAGAAGAAAGGGTGTGTTATATACTTCTCCGCAAAAACGGAAATTTTTCTCACTCAACACGGTATGCAAATTCCTAATTGAGGAAAGTGATAGAAGATCGTCTATATTTGGCATTCAACCTTTAAATGCCTCCTCAGTTGTTAACGAAGAAGGTTTTGATCAGGAAAGTATTCGAAAATCACCTATGTATGGCATTCAAGCTTTTAGTAGTGATGAAAGTGTTGATTGGGTACCAAGTGATGATGACTTATCAAGTAAAGACAGGGTTGCTACAAATAGATCAAAGCGAAAACGCACTGAATCATGTCTAAGAGTGAGATCAAATAAAAGAGTGCAGAATGTTTCTGTCCCTTCTCTATCACATCGGAAAGCTCTGAATGTTGTGTCTTGGTTGATAGACAGCAACGTGGTGTTACCAAGGTCTAATGTTTGTTATGTAGCAACAATACAGGGTGTCATGGCTTCTGGTCAAATAACTCACGATGGAATCAAGTGTAAATGTTGTCATAAAATATACAGTCTTGTTTCTTTCGAATTTCATGCTATTGGCAGTAATACCACCAGACCAAGTGCTAGTATCTTTCTGGATGATGGTAGGTCACTCTTACAGTGCCAGGTACAAATAATGCGAGATCATGTGTCAAGGGAGGCTATGGTTAAATCACAGAGTGATTTGTGTCAGAGTGAAAACGACTACATTTGTTCCATTTGCCGCAACGAGGGTGAACTTCTTTTGTGTGATCGGTGTCCGTCTTCTTATCATAAGACGTGTCTTGGTCTGGAGGACGTCCCTGACGGTGATTGGTTTTGTCCATCATGTCTTTGCGGGATTTGTGGCCAAAGAAAATTCAATGGGGGCAGTGAGGATGGACATTTCCTTAAATGCATTCAGTGTGAACATAAATATCATGTTGCATGCCTGATAAGTAGAGATACAAGTCAGTCCAGAAGTTATGTGGAAAGCCAGTTCTGCGGAAAAAACTGTGAAACGTTATATGAAGGCCTTCAAAGAATGCTGAGAGAGCCAGTTTCAGTGGGTGTAGACGATCTAACATGGACATTGGTGAAGTATATCGACTCCGAGAGTTGTGATACTGATAGTAGTAAAAGTGGATTATTGGCAGAAAGTTACAGCAAACTCAATGTTGCTGTTTCTGTGATGCATGAATGTTTTGAGCCCCAAAAGGAACCCTCCTCTGGCAGAGATCTGGTGGAAGATGTTATATTCAGCCGATGGTCAGAACTTAATCGAATGAATTTCCAGGGTTTCTATACTGTACTTCTAGAGAAAGATGAAGAGCTGGTCAGTGTAGCAATTATTAGGGTCTTTGGAGATAAGGTGGCTGAAGTACCTCTCGTTGGTACCAGATTTCAATATCGTCGACAGGGAATGTGCCACATCTTAATGGATGAACTGGAAAAGGTGGTGCACAGTCATACTTATATGGAAGTTCAACACAGTTTATGTTAA 2466 0.4084 MMAFRKCSSNSCNWVPVILSETEYCPEAVRQYALTSHNRKTLKERVWKHLVYLGWQIHQDGDHFRYKPPHGILCHKKFYYSLIEICKAIQMESVVNSSSVTMAHCPQAIVEYHKHALDPNSRDKGKLISKIRKYLVNEAWVLTYPPPGNKRSGVSYTSPQKRKFSSLNMVCKFLIEESVRSSSISGIQPLNASSVVNEESADQESIRKSPMYGIQPFVSDESVDWVPSDDDLSSKAPNLLPRESELYTVDRVATNRSRRKRDESRSLAAVPSPVAVAGEQATSSVAYCPQAVVEYHKHALDPNWGDKSELISKIREHLVKEGWVLTDPPLEKRRKGVLYTSPQKRKFFSLNTVCKFLIEESDRRSSIFGIQPLNASSVVNEEGFDQESIRKSPMYGIQAFSSDESVDWVPSDDDLSSKDRVATNRSKRKRTESCLRVRSNKRVQNVSVPSLSHRKALNVVSWLIDSNVVLPRSNVCYVATIQGVMASGQITHDGIKCKCCHKIYSLVSFEFHAIGSNTTRPSASIFLDDGRSLLQCQVQIMRDHVSREAMVKSQSDLCQSENDYICSICRNEGELLLCDRCPSSYHKTCLGLEDVPDGDWFCPSCLCGICGQRKFNGGSEDGHFLKCIQCEHKYHVACLISRDTSQSRSYVESQFCGKNCETLYEGLQRMLREPVSVGVDDLTWTLVKYIDSESCDTDSSKSGLLAESYSKLNVAVSVMHECFEPQKEPSSGRDLVEDVIFSRWSELNRMNFQGFYTVLLEKDEELVSVAIIRVFGDKVAEVPLVGTRFQYRRQGMCHILMDELEKVVHSHTYMEVQHSLC 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04968 821 ProSiteProfiles Zinc finger PHD-type profile. 563 608 IPR019787 -
Vivi3g04968 821 SUPERFAMILY FYVE/PHD zinc finger 545 606 IPR011011 -
Vivi3g04968 821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 549 621 IPR013083 -
Vivi3g04968 821 SMART ring_2 566 605 IPR001841 -
Vivi3g04968 821 SMART ring_2 607 656 IPR001841 -
Vivi3g04968 821 Pfam Tify domain binding domain 488 539 IPR032308 -
Vivi3g04968 821 Pfam PHD-finger 565 606 IPR019787 -
Vivi3g04968 821 PANTHER PHD FINGER PROTEIN 12 283 810 IPR042163 GO:0003714|GO:0045892
Vivi3g04968 821 SMART PHD_3 607 661 IPR001965 -
Vivi3g04968 821 SMART PHD_3 565 606 IPR001965 -
Vivi3g04968 821 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 741 811 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04968 Vivi-Chr3 95561769 95566217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04968 437 807 PHD Transcription Factor Family AT5G58610 48.011 8.43e-114 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi3g04968 TDBD 4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04968 - - vvo:131629107 1610.12