Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04967 ATGATGGCATTCAGAAAATGTTCTTCAAACTCGTGTAATTGGGTACCTGTAATTTTGTCTGAAACGGAATACTGCCCAGAAGCTGTTCGACAATATGCACTTACTTCTCACAACAGGAAGACTTTGAAGGAGAGAGTATGGAAGCATCTTGTATATCTTGGATGGCAAATTCACCAAGATGGTGATCATTTCAGGTACAAGCCACCCCATGGAATCTTGTGTCACAAGAAATTTTACTACTCACTTATTGAGATTTGTAAAGCTATCCAAATGGAATCCGTGGTGAACTCTTCTTCTGTTACAATGGCACATTGTCCTCAAGCCATTGTTGAATACCACAAACATGCACTCGACCCGAATTCGCGTGATAAAGGGAAACTTATTTCGAAAATAAGAAAGTATCTCGTGAACGAAGCATGGGTTTTGACTTACCCGCCACCAGGAAACAAAAGAAGCGGTGTGTCATATACTTCTCCGCAAAAACGGAAATTTAGCTCACTCAACATGGTATGCAAATTCCTAATTGAGGAAAGTGTTAGAAGTTCATCTATTTCTGGCATTCAACCTTTAAATGCCTCCTCGGTTGTTAATGAAGAAAGTGCTGATCAGGAAAGTATTCGAAAGTCACCTATGTATGGCATTCAACCTTTTGTTAGTGATGAAAGTGTTGATTGGGTACCAAGTGATGATGACTTATCAAGTAAAGCTCCAAACTTGCTTCCTCGTGAGAGCGAGTTATACACTGTAGACAGGGTTGCTACAAATAGATCAAGGCGAAAACGCGATGAATCAAGATCTCTAGCTGCGGTGCCTTCTCCTGTTGCAGTGGCGGGTGAACAAGCTACTTCTTCTGTGGCGTATTGTCCTCAAGCCGTTGTTGAATATCATAAACATGCACTCGACCCGAATTGGGGTGATAAAAGTGAACTTATTTCGAAAATAAGAGAGCATCTCGTGAAAGAAGGATGGGTTTTAACTGACCCGCCGCTAGAAAAAAGAAGAAAGGGTGTGTTATATACTTCTCCGCAAAAACGGAAATTTTTCTCACTCAACACGGTATGCAAATTCCTAATTGAGGAAAGTGATAGAAGATCGTCTATATTTGGCATTCAACCTTTAAATGCCTCCTCAGTTGTTAACGAAGAAGGTTTTGATCAGGAAAGTATTCGAAAATCACCTATGTATGGCATTCAAGCTTTTAGTAGTGATGAAAGTGTTGATTGGGTACCAAGTGATGATGACTTATCAAGTAAAGACAGGGTTGCTACAAATAGATCAAAGCGAAAACGCACTGAATCATGTCTAAGAGTGAGATCAAATAAAAGAGTGCAGAATGTTTCTGTCCCTTCTCTATCACATCGGAAAGCTCTGAATGTTGTGTCTTGGTTGATAGACAGCAACGTGGTGTTACCAAGGTCTAATGTTTGTTATGTAGCAACAATACAGGGTGTCATGGCTTCTGGTCAAATAACTCACGATGGAATCAAGTGTAAATGTTGTCATAAAATATACAGTCTTGTTTCTTTCGAATTTCATGCTATTGGCAGTAATACCACCAGACCAAGTGCTAGTATCTTTCTGGATGATGGTAGGTCACTCTTACAGTGCCAGGTACAAATAATGCGAGATCATGTGTCAAGGGAGGCTATGGTTAAATCACAGAGTGATTTGTGTCAGAGTGAAAACGACTACATTTGTTCCATTTGCCGCAACGAGGGTGAACTTCTTTTGTGTGATCGGTGTCCGTCTTCTTATCATAAGACGTGTCTTGGTCTGGAGGACGTCCCTGACGGTGATTGGTTTTGTCCATCATGTCTTTGCGGGATTTGTGGCCAAAGAAAATTCAATGGGGGCAGTGAGGATGGACATTTCCTTAAATGCATTCAGTGTGAACATAAATATCATGTTGCATGCCTGATAAGTAGAGATACAAGTCAGTCCAGAAGTTATGTGGAAAGCCAGTTCTGCGGAAAAAACTGTGAAACGTTATATGAAGGCCTTCAAAGAATGCTGAGAGAGCCAGTTTCAGTGGGTGTAGACGATCTAACATGGACATTGGTGAAGTATATCGACTCCGAGAGTTGTGATACTGATAGTAGTAAAAGTGGATTATTGGCAGAAAGTTACAGCAAACTCAATGTTGCTGTTTCTGTGATGCATGAATGTTTTGAGCCCCAAAAGGAACCCTCCTCTGGCAGAGATCTGGTGGAAGATGTTATATTCAGCCGATGGTCAGAACTTAATCGAATGAATTTCCAGGGTTTCTATACTGTACTTCTAGAGAAAGATGAAGAGCTGGTCAGTGTAGCAATTATTAGGTGGCTGAAGTACCTCTCGTTGGTACCAGATTTCAATATCGTCGACAGGGAATGTGCCACATCTTAA 2385 0.4092 MMAFRKCSSNSCNWVPVILSETEYCPEAVRQYALTSHNRKTLKERVWKHLVYLGWQIHQDGDHFRYKPPHGILCHKKFYYSLIEICKAIQMESVVNSSSVTMAHCPQAIVEYHKHALDPNSRDKGKLISKIRKYLVNEAWVLTYPPPGNKRSGVSYTSPQKRKFSSLNMVCKFLIEESVRSSSISGIQPLNASSVVNEESADQESIRKSPMYGIQPFVSDESVDWVPSDDDLSSKAPNLLPRESELYTVDRVATNRSRRKRDESRSLAAVPSPVAVAGEQATSSVAYCPQAVVEYHKHALDPNWGDKSELISKIREHLVKEGWVLTDPPLEKRRKGVLYTSPQKRKFFSLNTVCKFLIEESDRRSSIFGIQPLNASSVVNEEGFDQESIRKSPMYGIQAFSSDESVDWVPSDDDLSSKDRVATNRSKRKRTESCLRVRSNKRVQNVSVPSLSHRKALNVVSWLIDSNVVLPRSNVCYVATIQGVMASGQITHDGIKCKCCHKIYSLVSFEFHAIGSNTTRPSASIFLDDGRSLLQCQVQIMRDHVSREAMVKSQSDLCQSENDYICSICRNEGELLLCDRCPSSYHKTCLGLEDVPDGDWFCPSCLCGICGQRKFNGGSEDGHFLKCIQCEHKYHVACLISRDTSQSRSYVESQFCGKNCETLYEGLQRMLREPVSVGVDDLTWTLVKYIDSESCDTDSSKSGLLAESYSKLNVAVSVMHECFEPQKEPSSGRDLVEDVIFSRWSELNRMNFQGFYTVLLEKDEELVSVAIIRWLKYLSLVPDFNIVDRECATS 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04967 794 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 549 621 IPR013083 -
Vivi3g04967 794 PANTHER PHD FINGER PROTEIN 12 283 773 IPR042163 GO:0003714|GO:0045892
Vivi3g04967 794 Pfam PHD-finger 565 606 IPR019787 -
Vivi3g04967 794 ProSiteProfiles Zinc finger PHD-type profile. 563 608 IPR019787 -
Vivi3g04967 794 SUPERFAMILY FYVE/PHD zinc finger 545 606 IPR011011 -
Vivi3g04967 794 SMART ring_2 566 605 IPR001841 -
Vivi3g04967 794 SMART ring_2 607 656 IPR001841 -
Vivi3g04967 794 Pfam Tify domain binding domain 488 539 IPR032308 -
Vivi3g04967 794 SMART PHD_3 607 661 IPR001965 -
Vivi3g04967 794 SMART PHD_3 565 606 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04967 Vivi-Chr3 95561769 95566217 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04967 289 775 PHD Transcription Factor Family AT5G58610 35.951 1.62e-95 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi3g04967 TDBD 3.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04967 - - vvo:131629107 1543.1