Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04964 ATGTCTTGCTCGGTTGTCGTTTCAAATTCTAATGTCTTCTCTCTCCCCTCTCCTTGCCAATTCTCTCTCTCCTCGCCTGTTTTGAAGAGAAAGAGACCGGCTAAGCTTCATATACCCGTTGCTTCTCTGACTATCGAAGTCCCGCCGGCGGCAATGACTCCGGCACCGGAGAAGGACGTTGTTGAGGTGGAGGGAAACGGTTTTTCTGTATATTGTAAGAGAGGAAGTAGGAAACATATGGAGGATCGTTATTCGGCTTCTGATGATCTTCACGAAGAAACAAAACAGGCTTTTTTTGGCATATTTGATGGGCATGGAGGTGCAAAAGCTTCAGAATTCGCAGCAGATAACATGGAAAAGAATGTAATGGAAGAAGTGATCAGAAGAGATGAGAGTGATATTGAGGAAGCAGTGAAGCATGGCTACCTCAAAACAGATTCAGATTTCTTAAAAGAGGATGTTCATGGTGGTTCTTGCTGTGTAACAGCATTGATTAAGAACGGTAATCTTATCGTGTCCAATGCGGGCGATTGTCGCGCTGTTATTAGCCGAGGAGGTGTTGCTGAGGCCTTAACATCTGATCACAAACCTTCGAGGAAAGATGAAAAAGACAGGATCGAAACTCAGGGTGGTTATGTTGATATGTGCCGTGGCGTGTGGAGAATCCAAGGCTCTCTTGCTGTTTCTAGGAGCATTGGAGATAGACACATGAAACAATGGGTGATAGCAGAACCTGAGACCAAAGTTCTTAGAATTGAACCTCATCATGACTTGCTAATCCTAGCTTCAGATGGATTATGGGACAAGGTTAGTAATCAGGAAGCAGTAGATATAGCTCGTCCTCTTTGTGTAGGGAACAATAAACAAGGACCCTTTCAAGCCTGTAAGAAACTTGTCGATTTATCAGCGTCGCGAGGCTCTATCGATGATACAAGTGTTATGATCATCAAATTACAGAAATATATTTGA 969 0.4355 MSCSVVVSNSNVFSLPSPCQFSLSSPVLKRKRPAKLHIPVASLTIEVPPAAMTPAPEKDVVEVEGNGFSVYCKRGSRKHMEDRYSASDDLHEETKQAFFGIFDGHGGAKASEFAADNMEKNVMEEVIRRDESDIEEAVKHGYLKTDSDFLKEDVHGGSCCVTALIKNGNLIVSNAGDCRAVISRGGVAEALTSDHKPSRKDEKDRIETQGGYVDMCRGVWRIQGSLAVSRSIGDRHMKQWVIAEPETKVLRIEPHHDLLILASDGLWDKVSNQEAVDIARPLCVGNNKQGPFQACKKLVDLSASRGSIDDTSVMIIKLQKYI 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04964 322 Gene3D - 66 321 IPR036457 -
Vivi3g04964 322 PANTHER PROTEIN PHOSPHATASE 2C 60 317 IPR015655 GO:0004722|GO:0006470
Vivi3g04964 322 SMART PP2C_SIG_2 78 318 IPR001932 -
Vivi3g04964 322 Pfam Protein phosphatase 2C 68 310 IPR001932 -
Vivi3g04964 322 ProSiteProfiles PPM-type phosphatase domain profile. 67 318 IPR001932 -
Vivi3g04964 322 FunFam probable protein phosphatase 2C 25 60 321 - -
Vivi3g04964 322 ProSitePatterns PPM-type phosphatase domain signature. 98 106 IPR000222 GO:0043169
Vivi3g04964 322 SMART PP2C_4 60 316 IPR001932 -
Vivi3g04964 322 CDD PP2Cc 66 318 IPR001932 -
Vivi3g04964 322 Coils Coil 322 322 - -
Vivi3g04964 322 SUPERFAMILY PP2C-like 67 319 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04964 Vivi-Chr3 95429913 95432381 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04964 16 322 PP2C-type Phosphatase Gene Family AT2G30020 65.528 4.21e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04964 K17506 - gmx:100779913 496.893