Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04960 ATGGCATATCAAGATATTCTCCTAAAGCTTGAACCGAAAGACATTGTTCTAGTAAAACCATCAAAGCCCACTCCCTCTCCAACTCTTTCTCTGTCTACACTTGACAATAAAGACTTCAATAATAACCTTTGTCAAACTGTTCATGTATACCAATCATCAACAACTAATGATTCTCCTCGTCTATTCAAACAAGCACTCTCACATGCTTTGGTTTATTATTATCCTTACGCAGGTAGAATAATGAAACATGTGAATGATGAAAAATTTAGAGTTGTATTCAGTGCAAACAGTGAAGAATTTGGAGTTCCATTCTTAGAAGCAAATGCTAGCTGCACACTTTCTTCTCTTAATTACTTAGACAACACTGACACAGAGTTTGCAAAAGACTTGGTATTTGATCCTCAAGATAAGAGTTTCCCTTTAGTGTTCATGGTGACAAAATTTCGTTGTGGAGGCTTCACAATTGGAATGGGAGTTTCACATGTTATCTGTGATGGATTTGGCGCATCTCAATTATTCAAAGCCATTATCGAACTCGCAAATGGAAAATCTGAGCCATCACTGAAACCTGTTTGGGAAAGAGAGATACTTGTAGGACCAATAGTAACTAAACAAAAAGCTTCACAATGTTTCATGAATAAGGAACCCACTTCATTTTCGCCGTTGCTTCTTAAACCAAACACAGTTGTTAAGCAATATTGTTTTAAGATTGAGAAGAAGGTGATAGAAAAGCTGAAAATGCGTTTGATTAATGAAAGTCAAGAAAGGTTTGAATCAGTTACAACTTTTGAATCACTTGGTGCTTATGTATGGAGGGCAAGAGCAAGAGCTTTGAAGCTTGACAACAAAGGGAAAACAGTGCTTACTATGTTAGTTAGTATGAGACGTAACATGGAGGATATTTGTCTACCGGAAGGGTATTATGGAAATTCTACAGTTGATGCAAAAGTTGTGTTAAAAGCTAGTGAACTCAAGGAGAAACCATTGCATGAAATTGTGAAGTTGATGAAAAAGATGAAAAATGATGCTTTCACAACGGATTTTGTCAAAAACGCTATCAAAACTAGTTTGGAGAGAAATGAAGAGGAGGAGGATTATAGCATTGGATTAGCTAGTGGTGAGGTAATGGTTCTGACTATGTGGAAGCATTTGGGGTTTCAAGAGAGTATAAATTTTGGAGGGAATGAAGGAGTGGATATGGTAATAGCGCCGCGCAACTTGTTTGCATCTGCGGATACATGTATCTTCACCTCTCCTAATAAACTTGATGATCATGATCAAGCAATGAAAGGAGGGGTGAGGATTTTCATATCACTTCCTGTTGATGCTTTTGAGGAATTCAAAAAAGAGATTGAGGCTTTAAGGTTTCTTAATTGA 1377 0.3696 MAYQDILLKLEPKDIVLVKPSKPTPSPTLSLSTLDNKDFNNNLCQTVHVYQSSTTNDSPRLFKQALSHALVYYYPYAGRIMKHVNDEKFRVVFSANSEEFGVPFLEANASCTLSSLNYLDNTDTEFAKDLVFDPQDKSFPLVFMVTKFRCGGFTIGMGVSHVICDGFGASQLFKAIIELANGKSEPSLKPVWEREILVGPIVTKQKASQCFMNKEPTSFSPLLLKPNTVVKQYCFKIEKKVIEKLKMRLINESQERFESVTTFESLGAYVWRARARALKLDNKGKTVLTMLVSMRRNMEDICLPEGYYGNSTVDAKVVLKASELKEKPLHEIVKLMKKMKNDAFTTDFVKNAIKTSLERNEEEEDYSIGLASGEVMVLTMWKHLGFQESINFGGNEGVDMVIAPRNLFASADTCIFTSPNKLDDHDQAMKGGVRIFISLPVDAFEEFKKEIEALRFLN 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04960 458 Pfam Transferase family 14 453 - -
Vivi3g04960 458 Gene3D - 8 208 IPR023213 -
Vivi3g04960 458 PANTHER ACYL TRANSFERASE 4 13 452 - -
Vivi3g04960 458 Gene3D - 223 451 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04960 Vivi-Chr3 95267079 95268935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04960 8 367 Monolignol Biosynthesis Gene Families AT5G48930 27.034 8.80e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04960 K20240 - gmx:100801843 352.443