Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04948 ATGAAGATATCATTGTTGAAAATGCTTGTTGACAGCATATCGTCTTTTTTGCATTTATCATTTTCTGGAAACATGAACTCCGAACCAGTCTCAAGGTATTACCACCAGGCAGAGGAGATGCTTAAGTTGCTGAAGCCGATCATTGATGCTTTTGCTAATTCTGAGCTAGCGTCTGATGAAGTGCTTAGTAAGACATTCGAAGAACTTGGTCATGCTGTTGATGAATTAAAGGAGCACGTTGAGAATTGGCACCTGTTGTCTAGCAAAATTTACTTTGTTATGCAAGTTGAACCCTTGATATCAAGGATTCGGACTTCAGGTCTCAAGGTCTTGCAGCAGCTGAGGGTTTCAAATGAATTTCCTGATGATGAACTGAGTTCTGAACATTTGGAGAACTGTGTTCAGAAACTTAAGCTTTTGGAACTTGAAGAAACCTCATCCGTCATTAAGGAAGCTATTTCGGATCAACTGGATGGTGCAGGACCCAGTTCAGAGATCCTGGAAAAAATTGCTGATAGGTTGGGCCTAAATTCTAACGAGGAGGTTTTGATTGAAGCTGTGGCCCTAGAAAAGTTAAAGGAGAATGCTGAGCAGACTGAAAAGACTGCTGAAGCAGAATACATTGATCAAATTATTGCTGTTGTAACGCGTATGCACGAGGGCCTTGTTATGCTTAAGCAAGCCCAGAGTTGCACTCCAGTTCCAGTACCTGCTGATTTTTGTTGTCCACTTTCTTTGGAGTTAATGACTGATCCAGTGATTGTGGCCTCAGGGCAAACCTACGAGCGGGCTTTTATCAAGAACTGGATTGATCTTGGTCTTACTGTTTGTCCAAAGACCCATCAGACTCTGGCTCACACCAACCTAATACCTAACTACACTGTAAAAGCACTAATTGCAAACTGGTGTGAATCAAACAACGTGAAGCTTGTTGACCCCACTAAATCTACAGTCTTAAATCAAGCATCTGTTCTTCATGGGTATATGGAGTCTGGTACAACCCGGGAATCTCCTATTTTTCCTCATTCCAGGAGCAATCTGCCATCCTCACCTGAGTCGACTCGTTCCCGTTCTTTTAACTCACCAGGTAATAACTTACCTACTTCTGGTGGAATCCAGCGAGAGGGAACATCCCCTTTGCACCCTCGCTCAATATCAGAAGGTTCCTTAAGTGGCATAATTAATGGGCAGTATATGGATGCTGCTAGAACATCACCCACAGGTTTAGACGACAGGTCTGCTAGCTCAGATGAAAGCAGTGTAGATTCAATTGGCCATCCATCAATATCACCATCTAGAAGGGAATCTTCCGGGGCCTTCAGCTCTGAACTATCTCAAAACCATGTTAGAGCTGTATCTGATTCTGGTGCATTTTCTGATGCAAATTTTCAAGAAACACAAGGTGATGACAGCAATGCTTCTCAGCTGTCAACAAGTCCAGGCTACAGTAGAGATACTTCTGGCGAATTAAATCCCGGGTCAGATACTGCCGGTGCAGCTCCCATGCCATCAATGCATAGAGAACCTGAGTTCCCACCCCGGCTGATGGAGACTAGGTCTCGAAGCCAAGCTATATGGAGGAGGCCATCAGAAAGGCTTGTTCCTAGGATAATATCTTCTTCTGCTGTTGAATCAAGAGTTGATCTTTCTGGTATCGAGGCACAGGTTCGGGGTTTAGTTGAGGGCTTGAGGAGCATTGATCTTGATGCTAAGAGAGAGGCAACTTTAGAAATCCGTCTGCTTGCTAAGCACAATATGGATAATCGAATTGCAATTGCAAACTGTGGAGCCATTAACATACTAGTTGACTTACTTAAATCAACTGATACAAGGATCCAGGAAAATGCTGTTACAGCACTTCTCAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCATGTTCTTAAAAACGGGAGCCCAGAAGCCAAAGAGAATTCAGCTGCCACTCTTTTCAGCTTGTCGGTGATTGAGGAAAACAAGGTTAACATAGGGAGGTCTGGGGCAATTGGACCACTTGTAGACTTATTAGGGAATGGAACTCCAAGGGGAAAAAAAGATGCTGCCACCGCTTTGTTTAATTTGTCAATATTCCACGAGAACAAGAATCGTATTGTGCAAGATGGTGCTGTGAAGCACCTTGTGGAGTTGATGGACCCAGCGGCTGGAATGGTGGACAAGGCTGTGGCTGTCTTAGCAAATCTTGCCACAATTCCAGAAGGAAGAATTGCAATTGGTCAGGAAGGTGGGATTCCTGTTCTAGTTGAAGTTGTTGAGTTGGGTTCTGCTAGAGGAAAGGAGAATGCAGCAGCGGCTCTTCTACATCTTTGCTTACACAGTAATAGATTCTTAAGCATGGTGCTCCAACACGGAGCTGTGCCACCATTAGTAGCTTTATCGCAGTCAGGCACACCGAGGGCCAAAGAAAAGGCCCAAGCTCTCCTTAATCAATTTAGAAGTCAAAGACATGGAAATTCTGGGAGGGGCTGA 2520 0.4389 MKISLLKMLVDSISSFLHLSFSGNMNSEPVSRYYHQAEEMLKLLKPIIDAFANSELASDEVLSKTFEELGHAVDELKEHVENWHLLSSKIYFVMQVEPLISRIRTSGLKVLQQLRVSNEFPDDELSSEHLENCVQKLKLLELEETSSVIKEAISDQLDGAGPSSEILEKIADRLGLNSNEEVLIEAVALEKLKENAEQTEKTAEAEYIDQIIAVVTRMHEGLVMLKQAQSCTPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQTLAHTNLIPNYTVKALIANWCESNNVKLVDPTKSTVLNQASVLHGYMESGTTRESPIFPHSRSNLPSSPESTRSRSFNSPGNNLPTSGGIQREGTSPLHPRSISEGSLSGIINGQYMDAARTSPTGLDDRSASSDESSVDSIGHPSISPSRRESSGAFSSELSQNHVRAVSDSGAFSDANFQETQGDDSNASQLSTSPGYSRDTSGELNPGSDTAGAAPMPSMHREPEFPPRLMETRSRSQAIWRRPSERLVPRIISSSAVESRVDLSGIEAQVRGLVEGLRSIDLDAKREATLEIRLLAKHNMDNRIAIANCGAINILVDLLKSTDTRIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLKNGSPEAKENSAATLFSLSVIEENKVNIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQDGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRIAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSNRFLSMVLQHGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNSGRG 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04948 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 719 760 IPR000225 GO:0005515
Vivi3g04948 839 PANTHER U BOX DOMAIN-CONTAINING 29 827 - -
Vivi3g04948 839 MobiDBLite consensus disorder prediction 333 390 - -
Vivi3g04948 839 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Vivi3g04948 839 Pfam Armadillo/beta-catenin-like repeat 626 665 IPR000225 GO:0005515
Vivi3g04948 839 Pfam Armadillo/beta-catenin-like repeat 587 624 IPR000225 GO:0005515
Vivi3g04948 839 Pfam Armadillo/beta-catenin-like repeat 669 706 IPR000225 GO:0005515
Vivi3g04948 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 596 638 IPR000225 GO:0005515
Vivi3g04948 839 SMART arm_5 667 707 IPR000225 GO:0005515
Vivi3g04948 839 SMART arm_5 626 666 IPR000225 GO:0005515
Vivi3g04948 839 SMART arm_5 708 747 IPR000225 GO:0005515
Vivi3g04948 839 SMART arm_5 585 625 IPR000225 GO:0005515
Vivi3g04948 839 SMART arm_5 748 788 IPR000225 GO:0005515
Vivi3g04948 839 Coils Coil 179 209 - -
Vivi3g04948 839 MobiDBLite consensus disorder prediction 460 523 - -
Vivi3g04948 839 FunFam RING-type E3 ubiquitin transferase 539 834 - -
Vivi3g04948 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 678 720 IPR000225 GO:0005515
Vivi3g04948 839 CDD RING-Ubox_PUB 237 289 IPR045210 -
Vivi3g04948 839 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Vivi3g04948 839 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Vivi3g04948 839 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Vivi3g04948 839 MobiDBLite consensus disorder prediction 460 493 - -
Vivi3g04948 839 SUPERFAMILY ARM repeat 556 828 IPR016024 -
Vivi3g04948 839 MobiDBLite consensus disorder prediction 402 446 - -
Vivi3g04948 839 SUPERFAMILY RING/U-box 228 313 - -
Vivi3g04948 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Vivi3g04948 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 637 679 IPR000225 GO:0005515
Vivi3g04948 839 Gene3D - 537 834 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04948 Vivi-Chr3 94751118 94763004 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04948 196 839 U-box Gene Family AT2G23140 61.043 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04948 - - tpra:123913325 1493.4