Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04946 ATGAAGATATCATTGTTGAAAATGCTTGTTGACAGCATATCGTCTTTTTTGCATTTATCATTTTCTGGAAACATGAACTCCGAACCAGTCTCAAGGTATTACCACCAGGCAGAGGAGATGCTTAAGTTGCTGAAGCCGATCATTGATGCTTTTGCTAATTCTGAGCTAGCGTCTGATGAAGTGCTTAGTAAGACATTCGAAGAACTTGGTCATGCTGTTGATGAATTAAAGGAGCACGTTGAGAATTGGCACCTGTTGTCTAGCAAAATTTACTTTGTTATGCAAGTTGAACCCTTGATATCAAGGATTCGGACTTCAGGTCTCAAGGTCTTGCAGCAGCTGAGGGTTTCAAATGAATTTCCTGATGATGAACTGAGTTCTGAACATTTGGAGAAACTTAAGCTTTTGGAACTTGAAGAAACCTCATCCGTCATTAAGGAAGCTATTTCGGATCAACTGGATGGTGCAGGACCCAGTTCAGAGATCCTGGAAAAAATTGCTGATAGGTTGGGCCTAAATTCTAACGAGGAGGTTTTGATTGAAGCTGTGGCCCTAGAAAAGTTAAAGGAGAATGCTGAGCAGACTGAAAAGACTGCTGAAGCAGAATACATTGATCAAATTATTGCTGTTGTAACGCGTATGCACGAGGGCCTTGTTATGCTTAAGCAAGCCCAGAGTTGCACTCCAGTTCCAGTACCTGCTGATTTTTGTTGTCCACTTTCTTTGGAGTTAATGACTGATCCAGTGATTGTGGCCTCAGGGCAAACCTACGAGCGGGCTTTTATCAAGAACTGGATTGATCTTGGTCTTACTGTTTGTCCAAAGACCCATCAGACTCTGGCTCACACCAACCTAATACCTAACTACACTGTAAAAGCACTAATTGCAAACTGGTGTGAATCAAACAACGTGAAGCTTGTTGACCCCACTAAATCTACAGTCTTAAATCAAGCATCTGTTCTTCATGGGTATATGGAGTCTGGTACAACCCGGGAATCTCCTATTTTTCCTCATTCCAGGAGCAATCTGCCATCCTCACCTGAGTCGACTCGTTCCCGTTCTTTTAACTCACCAGGTAATAACTTACCTACTTCTGGTGGAATCCAGCGAGAGGGAACATCCCCTTTGCACCCTCGCTCAATATCAGAAGGTTCCTTAAGTGGCATAATTAATGGGCAGTATATGGATGCTGCTAGAACATCACCCACAGGTTTAGACGACAGGTCTGCTAGCTCAGATGAAAGCAGTGTAGATTCAATTGGCCATCCATCAATATCACCATCTAGAAGGGAATCTTCCGGGGCCTTCAGCTCTGAACTATCTCAAAACCATGTTAGAGCTGTATCTGATTCTGGTGCATTTTCTGATGCAAATTTTCAAGAAACACAAGGTGATGACAGCAATGCTTCTCAGCTGTCAACAAGTCCAGGCTACAGTAGAGATACTTCTGGCGAATTAAATCCCGGGTCAGATACTGCCGGTGCAGCTCCCATGCCATCAATGCATAGAGAACCTGAGTTCCCACCCCGGCTGATGGAGACTAGGTCTCGAAGCCAAGCTATATGGAGGAGGCCATCAGAAAGGCTTGTTCCTAGGATAATATCTTCTTCTGCTGTTGAATCAAGAGTTGATCTTTCTGGTATCGAGGCACAGGTTCGGGGTTTAGTTGAGGGCTTGAGGAGCATTGATCTTGATGCTAAGAGAGAGGCAACTTTAGAAATCCGTCTGCTTGCTAAGCACAATATGGATAATCGAATTGCAATTGCAAACTGTGGAGCCATTAACATACTAGTTGACTTACTTAAATCAACTGATACAAGGATCCAGGAAAATGCTGTTACAGCACTTCTCAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCATGTTCTTAAAAACGGGAGCCCAGAAGCCAAAGAGAATTCAGCTGCCACTCTTTTCAGCTTGTCGGTGATTGAGGAAAACAAGGTTAACATAGGGAGGTCTGGGGCAATTGGACCACTTGTAGACTTATTAGGGAATGGAACTCCAAGGGGAAAAAAAGATGCTGCCACCGCTTTGTTTAATTTGTCAATATTCCACGAGAACAAGAATCGTATTGTGCAAGATGGTGCTGTGAAGCACCTTGTGGAGTTGATGGACCCAGCGGCTGGAATGGTGGACAAGGCTGTGGCTGTCTTAGCAAATCTTGCCACAATTCCAGAAGGAAGAATTGCAATTGGTCAGGAAGGTGGGATTCCTGTTCTAGTTGAAGTTGTTGAGTTGGGTTCTGCTAGAGGAAAGGAGAATGCAGCAGCGGCTCTTCTACATCTTTGCTTACACAGTAATAGATTCTTAAGCATGGTGCTCCAACACGGAGCTGTGCCACCATTAGTAGCTTTATCGCAGTCAGGCACACCGAGGGCCAAAGAAAAGGCCCAAGCTCTCCTTAATCAATTTAGAAGTCAAAGACATGGAAATTCTGGGAGGGGCTGA 2508 0.439 MKISLLKMLVDSISSFLHLSFSGNMNSEPVSRYYHQAEEMLKLLKPIIDAFANSELASDEVLSKTFEELGHAVDELKEHVENWHLLSSKIYFVMQVEPLISRIRTSGLKVLQQLRVSNEFPDDELSSEHLEKLKLLELEETSSVIKEAISDQLDGAGPSSEILEKIADRLGLNSNEEVLIEAVALEKLKENAEQTEKTAEAEYIDQIIAVVTRMHEGLVMLKQAQSCTPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQTLAHTNLIPNYTVKALIANWCESNNVKLVDPTKSTVLNQASVLHGYMESGTTRESPIFPHSRSNLPSSPESTRSRSFNSPGNNLPTSGGIQREGTSPLHPRSISEGSLSGIINGQYMDAARTSPTGLDDRSASSDESSVDSIGHPSISPSRRESSGAFSSELSQNHVRAVSDSGAFSDANFQETQGDDSNASQLSTSPGYSRDTSGELNPGSDTAGAAPMPSMHREPEFPPRLMETRSRSQAIWRRPSERLVPRIISSSAVESRVDLSGIEAQVRGLVEGLRSIDLDAKREATLEIRLLAKHNMDNRIAIANCGAINILVDLLKSTDTRIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLKNGSPEAKENSAATLFSLSVIEENKVNIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQDGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRIAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSNRFLSMVLQHGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNSGRG 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04946 835 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 306 IPR013083 -
Vivi3g04946 835 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 633 675 IPR000225 GO:0005515
Vivi3g04946 835 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 592 634 IPR000225 GO:0005515
Vivi3g04946 835 Pfam U-box domain 232 302 IPR003613 GO:0004842|GO:0016567
Vivi3g04946 835 MobiDBLite consensus disorder prediction 329 386 - -
Vivi3g04946 835 SMART Ubox_2 235 298 IPR003613 GO:0004842|GO:0016567
Vivi3g04946 835 Coils Coil 175 205 - -
Vivi3g04946 835 MobiDBLite consensus disorder prediction 456 519 - -
Vivi3g04946 835 ProSiteProfiles U-box domain profile. 231 305 IPR003613 GO:0004842|GO:0016567
Vivi3g04946 835 PANTHER U BOX DOMAIN-CONTAINING 29 823 - -
Vivi3g04946 835 Pfam Armadillo/beta-catenin-like repeat 583 620 IPR000225 GO:0005515
Vivi3g04946 835 Pfam Armadillo/beta-catenin-like repeat 622 661 IPR000225 GO:0005515
Vivi3g04946 835 Pfam Armadillo/beta-catenin-like repeat 665 702 IPR000225 GO:0005515
Vivi3g04946 835 CDD RING-Ubox_PUB 233 285 IPR045210 -
Vivi3g04946 835 Gene3D - 533 830 IPR011989 -
Vivi3g04946 835 FunFam RING-type E3 ubiquitin transferase 535 830 - -
Vivi3g04946 835 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 674 716 IPR000225 GO:0005515
Vivi3g04946 835 MobiDBLite consensus disorder prediction 456 489 - -
Vivi3g04946 835 SUPERFAMILY ARM repeat 552 824 IPR016024 -
Vivi3g04946 835 MobiDBLite consensus disorder prediction 398 442 - -
Vivi3g04946 835 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 715 756 IPR000225 GO:0005515
Vivi3g04946 835 SUPERFAMILY RING/U-box 224 309 - -
Vivi3g04946 835 FunFam RING-type E3 ubiquitin transferase 231 306 - -
Vivi3g04946 835 SMART arm_5 744 784 IPR000225 GO:0005515
Vivi3g04946 835 SMART arm_5 622 662 IPR000225 GO:0005515
Vivi3g04946 835 SMART arm_5 581 621 IPR000225 GO:0005515
Vivi3g04946 835 SMART arm_5 663 703 IPR000225 GO:0005515
Vivi3g04946 835 SMART arm_5 704 743 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04946 Vivi-Chr3 94751117 94763004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04946 192 835 U-box Gene Family AT2G23140 61.043 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04946 - - tpra:123913325 1473.76