Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04942 ATGGAGAGTAGTGATATGGAACCGAATGTGTTAATGGAACGGTACGAGTTGGGGAGATTGCTTGGTCAAGGGACGTTTGGGAAGGTTTACTATGCACGGAGTAAGGTGACTAACCAGAGTGTTGCGATTAAAGCGATAGAGAAAAATAAGGTTATGAGAACGGGTCTAGTTGATCGAATCAAGCGTGAGATATCGGTTATGAAATTGGCTAGGCATCCTAATATTATACAGCTTTTTGAGGTTATGGCGACGAAGACTAAGATTTACTTTGTTATCGAGTATGCTAAAGGCGGTGAACTTTTCAACAAGGTTTCGAAAGGTAAACTCAAAGAAGAAGTTGCGCATAGATATTTTAAGCAGTTGATCAATGCGGTTGATTTTTGTCACAGTAGAGGTGTGTATCATCGAGATATTAAGCCTGAAAATATTCTGTTGGACGAAAATGGGAATCTAAAGGTTTCTGATTTTGGGTTAAGTGCTCTTGTGGAGTCAAATCAAGAGGATAGTATGCTCCGTACGCCTTGTGGCACTCCGGCCTATGTTGCTCCTGAAGTTATCAAAAGAAAAGGGTATGACGGCGCGAAAGCCGATATTTGGTCATGTGGAATAGTTCTGTTTGTTTTATTGGCAGGTTATCTCCCTTTTCATGACTCGAATTTGATTGAGATGTATAGGAAGATAAGCAAAGCAGAAATAAAATATCCTAGTTGGTTTCGGCCTGAAGTTTGCAAGCTATTAGGCGATATATTGAATCCGAAACCTGATACTAGGATTTCCATAGCTGAGATTAAGGAACATTCTTGGTTTAAAAATGAACCAAATCCTAGGAATAAAAAACCACAAGTGGAAAACAGCACTCTTTCTGCTTCTTCTTCCAGTACAGTTGTGACTGATGAAAACGACAGTCCAGAAGCGGAAGAAGCAAAGGAAGAGCCGTTTGTGCCGACCAGTATAAATGCCTTTGATATTATTTCCCTTTCGGTTGGTTTTGATCTTTCTAGATTCTTTAAAGACGATGTTCAGAAAAAAGAAGCAAGATTTAGTTCGAAACTACCTGCATCAGTCATCATCTCGAAGATGGGAGACATTGCTAAGCAACTAGGGATGAAAATTCAGAAAAAAGCCGCTGGTTTGTTGAAATTGGAAGGATTGAGTGAAGGTAGAAAAGGGGTTTTATCGATTGACGCAGAGATCTTTGAGGTTACTCCTAATTTCCATTTAGTCGAGGTGAAAAAATCGAATGGAGATACATTGGAATATCAGAAAATTCTGAAAGAGGATATTAGGCCTGCTCTTCAGGATATTGTTTGGGTGTGGCAAAGTGACCAACCACTGCAATCTCAACAATCAGATCGACAGCTACAGATACATGACCAGCAGCAATGA 1386 0.399 MESSDMEPNVLMERYELGRLLGQGTFGKVYYARSKVTNQSVAIKAIEKNKVMRTGLVDRIKREISVMKLARHPNIIQLFEVMATKTKIYFVIEYAKGGELFNKVSKGKLKEEVAHRYFKQLINAVDFCHSRGVYHRDIKPENILLDENGNLKVSDFGLSALVESNQEDSMLRTPCGTPAYVAPEVIKRKGYDGAKADIWSCGIVLFVLLAGYLPFHDSNLIEMYRKISKAEIKYPSWFRPEVCKLLGDILNPKPDTRISIAEIKEHSWFKNEPNPRNKKPQVENSTLSASSSSTVVTDENDSPEAEEAKEEPFVPTSINAFDIISLSVGFDLSRFFKDDVQKKEARFSSKLPASVIISKMGDIAKQLGMKIQKKAAGLLKLEGLSEGRKGVLSIDAEIFEVTPNFHLVEVKKSNGDTLEYQKILKEDIRPALQDIVWVWQSDQPLQSQQSDRQLQIHDQQQ 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04942 461 FunFam Non-specific serine/threonine protein kinase 9 312 - -
Vivi3g04942 461 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Vivi3g04942 461 Gene3D Kinase associated domain 1, KA1 319 438 - -
Vivi3g04942 461 Gene3D Transferase(Phosphotransferase) domain 1 7 318 - -
Vivi3g04942 461 MobiDBLite consensus disorder prediction 278 299 - -
Vivi3g04942 461 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04942 461 FunFam Non-specific serine/threonine protein kinase 314 437 - -
Vivi3g04942 461 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vivi3g04942 461 Pfam Protein kinase domain 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04942 461 SUPERFAMILY Protein kinase-like (PK-like) 11 317 IPR011009 -
Vivi3g04942 461 CDD CIPK_C 319 433 - -
Vivi3g04942 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Vivi3g04942 461 MobiDBLite consensus disorder prediction 270 311 - -
Vivi3g04942 461 Pfam NAF domain 315 373 IPR004041 GO:0007165
Vivi3g04942 461 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04942 461 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165
Vivi3g04942 461 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04942 Vivi-Chr3 94654744 94657156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04942 7 443 CBL-interacting serine-threonine protein kinases AT5G58380 64.365 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vivi3g04942 Pkinase 9.2e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04942 - - gmx:100790905 701.049