Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04922 ATGAACACCACTCTCTCCGTTCTCAAGGATTACTTCGGGTTTATGAGTTTTCGACCTTATCAGCAAGAGGTTATTGAGAAAATTATTGAGAAAAGGGATTGTTTGGTAGTTATGGCTACTGGTAGTGGCAAGTCATTATGTTATCAAGTGCCTCCGTTGGTTGTGAAAAAGACTGGGATAGTTGTAAGCCCTTTAATATCATTGATGCAAGATCAGGTAATGGCTTTGAAACAGCGAGGTATCAAAGCTGAATATCTTTCAAGTGCTCAGAAGGATTATACTATTCAGGGTAAAGCTGAGCGTGGCCAATTTGATATTCTGTTTATGACTCCTGAGAAGGCATGCACAATTCCTACCAGTTTCTGGTCCAACTTGCTAAAGGAAGGGATTAGTCTTTTTGCTGTTGATGAAGCACATTGTATATCAGAATGGGGGCATGACTTTAGGGTAGAATACAAGCAGTTAGACAAGTTACGTGGTGTTCTGTTAGATGTTCCTTATGTTGGTCTAACTGCAACGGCTACTGAAAAGGTTCGGTTTGACATCACCAATTCCTTGAAGTTGAATAATCCTTATATTGTTGTTGGTTCATTTGATCGCCCGAATCTTTTCTATGGTGTCAAGCAATTTAACAAAGGACAATATTTTATTGATGAGCTTGTGGAAGAAATTTCAAAAGAAGTTGCTAATGGTTGTTCAACTATAATTTACTGCACAACAATCAAAGATGTAGAACAGATATATAAGTCACTTATGGACGTTGGTATTAATGCTGGAATGTACCACGGTCAAATGGATGGAAAATCACGAGAGGAGTCTCACAGATTATTTGTTAGAGACGAAAAGCAAGTCATGGTGGCTACAATTGCCTTTGGCATGGGCATAGATAAACCTAATATAAGAAAAGTGATTCATTATGGCTGCCCTAAAAATCTAGAGTCCTACTACCAGGAAAGCGGGAGATGTGGTAGAGATGGTATAGCTTCTGCTTGTTGGCTTTACTACACAAGAAGTGACTTTTCAAAGGGCGATTTTTATGCTGGAGATTTAAAATCGGAAAACCAAAAAAAAGCTGTTATGGAGTCATTGCTTAACGCTCAACACTATTGTTTGTCGGCAACTTGCAGAAGAAAGTTCTTGCTAGAACACTTTGGAGAAAAATTTGCAGCTGATAGATGTGGAAACTGTGATAACTGCACAGTCTTGAAGCAACATCGCGACATGTCAAAAGAAGCCTTTCTTCTAATGGCTTGCATTCATTCATGCAAGGGAAGATGGGGCCTTAATATGCCAATTGACATCCTGCGCGGTTCTCGAGCAAAGAAAATAATGGAAGCTCAATATGACCAGCTTCCACTTCATGGACTTGGGAAAGCATACCAAGCAAATTGGTGGAAAGCACTTGGACATCAATTGATTTCTCTAGGTTATTTGAAGGAGTTTGTTAGTGACGTGTACAGAAATGTAAGTGTCAGTTCAAAAGGAGAACAATTTTTGGCCACATGTAGACCAGACTATCAACCTCCTTTGGTTTTGCCATTGGTTGGTGAGCTCGCAGAAGAGGAAACTAGAAGCGCAGAAGAAATCAAAATTTTGTCTGCTTCAGAATCTGGAGGTTTTTCAGAGGCTGAGGGGCAGCTCTACCAAATGCTTTTAGAAGAAAGATTAAATCTTGCACGAAGTGTTGGAACAGCTCCATATGCTCTATGTGGTGATCAAACAATCAGAAAAATTGCCTTGACAAGACCATCTACAAAAGCACGGCTAGCAAATATTGATGGTGTGAATCAGCACTTAGTAACAACATATGGAGACCATTTTCTTCAAGCCATTCGGAAACTATCACAAGAATTAAAACTATCATTGGATGGTGAACCGGTATTCCAAACTAATGAAGTACGGAAAGTATCTCCGGTAGTATCAATCAAATCAACCAAGTTGTCAGGAGCAAAGTTAGACGCATGGAAAATGTGGCATGAGGAAGGTCTTTCTATTCAGAGGATTGCGAACTTTCCAGCTAGAGCAGCTCCTATTCAAGAACAAACTGTTGTTCAGTATCTGTTGGACGCTGCCCTAGAAGGATTACCGATTGATTGGACAAGATTCTGCGAGGCGATAGGGCTGAAACAAGATTTCATATCAGCAATTCGGGGTGCTATTGCAAAAGTTGGATCTGCTGATAAGATGAAGCCTATAAAAAATGAATTGCCAGAAGAAATAACGTATCCGCACATCAAGGCTTACTTAACAATGCAAACCTGTGGAGTATCCTTAGAAAGTAACCAGTCTGGGAAAGATGGTGAAGCTGTAAACAATGCATCAAATTTGTCAGAACCATCTTCAGTAACACGCGACACAGAAAATCATCTTGAAGCTAACGTTGTTACCGAAAGTATAAAGGAAACTGATGAAGTGGTACCTTCTGGACCAGTCAATGTTTGCCAGGTACAAGAGTTTCCAACAAGCAAACGACTGAAAGTCAGCGAAACAGAGGAAGTAAAAATAATTAAATTGAAAGCTACAGAGAGTTCTGTTGTAGAGTGGCTGAAGAACCTTGATGAAGGGGCTACTTTGACTGATATGTTGGAGCACTTCAATGGGTCCAATGAAGATTCCATTGTTGAACTGCTAAGTTCCCTTGAGTGTGACTTTTCGATATATAAGAAACGTAACGTGTACAGGGCTATGTAA 2691 0.3991 MNTTLSVLKDYFGFMSFRPYQQEVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGIKAEYLSSAQKDYTIQGKAERGQFDILFMTPEKACTIPTSFWSNLLKEGISLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLLDVPYVGLTATATEKVRFDITNSLKLNNPYIVVGSFDRPNLFYGVKQFNKGQYFIDELVEEISKEVANGCSTIIYCTTIKDVEQIYKSLMDVGINAGMYHGQMDGKSREESHRLFVRDEKQVMVATIAFGMGIDKPNIRKVIHYGCPKNLESYYQESGRCGRDGIASACWLYYTRSDFSKGDFYAGDLKSENQKKAVMESLLNAQHYCLSATCRRKFLLEHFGEKFAADRCGNCDNCTVLKQHRDMSKEAFLLMACIHSCKGRWGLNMPIDILRGSRAKKIMEAQYDQLPLHGLGKAYQANWWKALGHQLISLGYLKEFVSDVYRNVSVSSKGEQFLATCRPDYQPPLVLPLVGELAEEETRSAEEIKILSASESGGFSEAEGQLYQMLLEERLNLARSVGTAPYALCGDQTIRKIALTRPSTKARLANIDGVNQHLVTTYGDHFLQAIRKLSQELKLSLDGEPVFQTNEVRKVSPVVSIKSTKLSGAKLDAWKMWHEEGLSIQRIANFPARAAPIQEQTVVQYLLDAALEGLPIDWTRFCEAIGLKQDFISAIRGAIAKVGSADKMKPIKNELPEEITYPHIKAYLTMQTCGVSLESNQSGKDGEAVNNASNLSEPSSVTRDTENHLEANVVTESIKETDEVVPSGPVNVCQVQEFPTSKRLKVSETEEVKIIKLKATESSVVEWLKNLDEGATLTDMLEHFNGSNEDSIVELLSSLECDFSIYKKRNVYRAM 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04922 896 SUPERFAMILY HRDC-like 540 617 IPR010997 GO:0000166|GO:0044237
Vivi3g04922 896 CDD SF2_C_RecQ 200 335 - -
Vivi3g04922 896 FunFam ATP-dependent DNA helicase 1 198 - -
Vivi3g04922 896 ProSiteProfiles HRDC domain profile. 541 621 IPR002121 GO:0003676
Vivi3g04922 896 Pfam HRDC domain 546 611 IPR002121 GO:0003676
Vivi3g04922 896 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Vivi3g04922 896 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 372 IPR001650 -
Vivi3g04922 896 Pfam RecQ zinc-binding 349 400 IPR032284 -
Vivi3g04922 896 SMART helicmild6 245 326 IPR001650 -
Vivi3g04922 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 340 IPR027417 -
Vivi3g04922 896 CDD DEXHc_RecQ 5 199 - -
Vivi3g04922 896 PANTHER DNA HELICASE RECQ FAMILY MEMBER 6 663 - -
Vivi3g04922 896 Pfam Helicase conserved C-terminal domain 218 325 IPR001650 -
Vivi3g04922 896 MobiDBLite consensus disorder prediction 760 787 - -
Vivi3g04922 896 SUPERFAMILY "Winged helix" DNA-binding domain 405 500 IPR036390 -
Vivi3g04922 896 Gene3D - 1 198 IPR027417 -
Vivi3g04922 896 FunFam ATP-dependent DNA helicase 537 626 - -
Vivi3g04922 896 Gene3D - 403 527 IPR036388 -
Vivi3g04922 896 Pfam RQC domain 404 500 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vivi3g04922 896 Gene3D HRDC domain 540 624 IPR044876 -
Vivi3g04922 896 SMART ultradead3 13 210 IPR014001 -
Vivi3g04922 896 Pfam Helix-turn-helix domain 653 749 IPR029491 -
Vivi3g04922 896 Gene3D - 200 402 IPR027417 -
Vivi3g04922 896 NCBIfam RecQ family ATP-dependent DNA helicase 6 458 IPR004589 GO:0004386|GO:0006310
Vivi3g04922 896 FunFam ATP-dependent DNA helicase 200 401 - -
Vivi3g04922 896 SMART RQC_2 407 511 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vivi3g04922 896 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Vivi3g04922 896 SMART hrdc7 541 621 IPR002121 GO:0003676
Vivi3g04922 896 FunFam ATP-dependent DNA helicase 402 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04922 Vivi-Chr3 94275426 94283322 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04922 12 339 Eukaryotic Initiation Factors Gene Family AT3G19760 22.899 1.88e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04922 K03654 - gmx:100797777 1354.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04922 3 94275426 94283322 Vivi3g04922 3 94275426 94283322 ECH