Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04898 ATGAAAACAATGGACAAAGACATATCAAACTGGGTCATGGAGTTTCTCCTTCGAAGCTCCGTTCCCGATTCCCTCATCCATAAAACCCTAACCGTTCTTCCACTCTCCGGCGCCGATTCTCGTCTCAAAAAAACCCTCCTCCTCCGTACTCTCCAAACTCACCTCCGCACCGCCTCCCTCTCCGAAACCTCTCTCCAAATCATCGAATCCCTCGAGGAGCTTTACCGCAGAGATGAGATTCGTGTCTCCGCGGCAATGCGCAGCGCTTATTGCGCTGTTGCTGTTGAGTGTACCGTGAAATATCTTATTACTTCCCATGAGGATCCATCCGGAGAGTATTTTTCCGCTGTTCGAAGGATCTGGCGTGGTCGTGTTGTTCAATTGTCGGCTGAGGGACAGAGGAGTGAGCTTCTATCGGAGGAGTTGTCGCGGTGGGGAGAGGACATTGAGGCTGCGCTTTGGGATGTTAGGGCTTCGGAGAGGCTTGCGGGTTTGAATACAAGGAGAGATGCGATGAATGAGGTTCATAGGTTTTTGAAGGATGCGTGGCAAGTTATGGGACCTTCGTTTCTTGATTCGATGGCGATGGTCTCTAAAGGGAATGGTTTACGTCCTGAAGGTGTTTGTGGAAATGCTTCGGGTAGTGAAAAGTTGAAGAAGAGTGATGGAAGGTTAGATAGTTTGGGAAAGGAGAAAATGTGTTCTGTTGTGGATGATAACAATGATAATGACAATGTTGATGATGGTGGTGATGATGATGACGACGTGGCAGTGATGGGTGAAAACCATGGGAATGAAAGATTGGAAGAGAGAGTTGGTACTTCTGTTGATGCAAATCAGGAAGTGGGTGGGTGTGATTCTTCAAATGTAGATAAAGAAATTTGGGAAGGCAATGTTCGGCTCAAACGCAAGCACTCTGCACTACGAACATGCCATAGAGGAGTTAAAATCTCTGGTGCTGAGGAAGTGAGGCCAACAAATTTATCGAGTAAATATAAAATCTTGCCTAGTCCTGAAGTAGAGAAAGTTCGGGAATCCCTTAAATCAAGTTCTATGGAGTTAAAGGCATTGGTCAAGGATCCTCTTCCTGATGCATTGCGATCATCTGAAGATGTAAGATCCAAATTGGCAACAAAACATATAAATCTTGGGCCACCGAGTGAAAATCAGAGTGGACCTGTAGATGTACGGCGTTCAGATGGATGCAAAACTATTGTACTTTATCAGGCTAAGGCTAATGATGCCAATCTTTCAAAGAAGTCTTCTGTTCCTTGTAGTAATGATCGCCGCCCCAACTTTATGGGGCGGGCAAGTTCTGCTCATACTTACGAGTGGGATGATTCAATTGATAACTCACTACAAGCTAGACAGCCAAGAAGGAAGAAAAGGAAATGGACTTCATTGGAAGAGGAGACACTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAACTGGCGGACAATTCGAGACTTTTACAGCAACATATTTGAATATAGAAGTGGAGTTGATCTAAAAGACAAGTGGAGAAATATGATGCGGTGA 1542 0.4514 MKTMDKDISNWVMEFLLRSSVPDSLIHKTLTVLPLSGADSRLKKTLLLRTLQTHLRTASLSETSLQIIESLEELYRRDEIRVSAAMRSAYCAVAVECTVKYLITSHEDPSGEYFSAVRRIWRGRVVQLSAEGQRSELLSEELSRWGEDIEAALWDVRASERLAGLNTRRDAMNEVHRFLKDAWQVMGPSFLDSMAMVSKGNGLRPEGVCGNASGSEKLKKSDGRLDSLGKEKMCSVVDDNNDNDNVDDGGDDDDDVAVMGENHGNERLEERVGTSVDANQEVGGCDSSNVDKEIWEGNVRLKRKHSALRTCHRGVKISGAEEVRPTNLSSKYKILPSPEVEKVRESLKSSSMELKALVKDPLPDALRSSEDVRSKLATKHINLGPPSENQSGPVDVRRSDGCKTIVLYQAKANDANLSKKSSVPCSNDRRPNFMGRASSAHTYEWDDSIDNSLQARQPRRKKRKWTSLEEETLRAGVKMFGEGNWRTIRDFYSNIFEYRSGVDLKDKWRNMMR 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04898 513 SUPERFAMILY Homeodomain-like 458 512 IPR009057 -
Vivi3g04898 513 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 457 513 IPR017930 -
Vivi3g04898 513 SMART sant 461 513 IPR001005 -
Vivi3g04898 513 PANTHER MYB TRANSCRIPTION FACTOR 4 513 - -
Vivi3g04898 513 CDD SANT_TRF 463 513 - -
Vivi3g04898 513 Pfam Myb-like DNA-binding domain 462 511 IPR001005 -
Vivi3g04898 513 ProSiteProfiles Myb-like domain profile. 457 512 IPR001005 -
Vivi3g04898 513 Gene3D - 453 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04898 Vivi-Chr3 93563669 93568125 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04898 465 512 Single Myb Histone (SMH) Gene Family AT1G15720 52.083 9.59e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi3g04898 Myb_DNA-binding 1.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04898 - - tpra:123916300 594.734