Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04896 ATGACTAGAAAAAAGGTGAAGCTTGCTTTCATTGAGAATGATACCTCAAGGAAAACAACATATAATAAAAGAAAGAAGAGTTTATTAAAGAAGGTTGATGAGCTAACAACTCTTTGCGGAATCGACGCGTGTGCTATAATTTATAGCCCATATGATCCTCAACCTGAGATTTGGCCATCGCCGTGGGGAGTTCAAAAGGTGCTTTCAAAATTCAGGGCAATGCCTGAATTAGAACAAAGCAAAAAGATGGTCAATCAGGAGAGTTTTCTGAAACAAAGTATTTCGAAGGCTAAAGAGCAAGTTAAGAAGCAACAAAAAGACAATAAAGAGAAACAAACAACCATGCTAATGTTTCAATGTCTTAATGCTGGGATGATTGTGCAGAACAATATGTCGGCGGGTGATCTGAATGAGCTTGCTTGGATGATTGATCAAAATCTGAAGGAGATTGGTAAAAGGATGGAACCAGGTGAGAACCAAATCAATATTCATCAAAATCAAAGTGGAAGTCAAATTATGACGGCTCAAAGCCATGCCCTACTCCAAATGGCACCGCCGTTACCACCGCAGCCGCCACCAAACACATTTAATAATGATGAAATTGCAGTGATGGGTCATGGTCAAGTTGGGATGGCTATGAACAATAATGACATCATTCAAAGGAAGTTGTTTCTGGACATGATGATGAATGGTGGTGGAAATGAAAAAATTCCATTTGGTTATGATGCCAATATTCAGAGTGGGTTTTGGCCTAATCGATTATCTTGA 768 0.3906 MTRKKVKLAFIENDTSRKTTYNKRKKSLLKKVDELTTLCGIDACAIIYSPYDPQPEIWPSPWGVQKVLSKFRAMPELEQSKKMVNQESFLKQSISKAKEQVKKQQKDNKEKQTTMLMFQCLNAGMIVQNNMSAGDLNELAWMIDQNLKEIGKRMEPGENQINIHQNQSGSQIMTAQSHALLQMAPPLPPQPPPNTFNNDEIAVMGHGQVGMAMNNNDIIQRKLFLDMMMNGGGNEKIPFGYDANIQSGFWPNRLS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04896 255 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi3g04896 255 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi3g04896 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi3g04896 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g04896 255 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi3g04896 255 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Vivi3g04896 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vivi3g04896 255 Coils Coil 94 114 - -
Vivi3g04896 255 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi3g04896 255 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g04896 255 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Vivi3g04896 255 PANTHER MADS BOX PROTEIN 3 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04896 Vivi-Chr3 93510663 93511471 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04896 1 180 Type I MADS-box Gene Family AT5G48670 54.444 1.61e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04896 SRF-TF 1.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04896 - - vvo:131658560 267.7