Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04890 ATGACTAGGAAGAAGGTGAAACTTGCTTTCATTGAGAACAATACCGCAAGGAAGGTAGCATACAAGAAAAGAAACAAGAGTTTATTGAAGAAGGTCGATGAAATATCAACACTTTGTGGTATCGAGGCTTGTGCGATTATTTATGGCCCATACGATCCTCAACCTGAGATCTGGCCATCACCATCGGGAGTTGAAAAGGTGCTTTCGAAGTTCAAGACAGCACCGGAGTTTGACCAAAGCAGAAGGATGGTGGATCAAGATAGTTTTCTGAAACAAAGAATTTCCAAGGCTGAAAAGCAACTGAAAAGGCAATGGGCAGATAACAAAGAGATTGAAACAACCATGCTGATGTTTCAATGTCTCAATGCTGGGAATGTCGTGCAGAACAATATGTCGATGGGTGATTTGAATGAACTTTCTCACATGATTAATCATAATTTGAGGAAGATTGGTAGAAGGATTGAATCAGTTGATAGTGAAAATATTAATCAACAAAATCCAATCGAAAGTCAAGTCATGGCTGCTCAAAGCAAAGTCCAACTCCCTATGGCACCGCCACCACCACTACTACCACCGCCGCCGCCACCACCAACCGTACCTGATAATGATGATATTGAAATGATGAGTAGGTTGGGATGGATATGA 645 0.4155 MTRKKVKLAFIENNTARKVAYKKRNKSLLKKVDEISTLCGIEACAIIYGPYDPQPEIWPSPSGVEKVLSKFKTAPEFDQSRRMVDQDSFLKQRISKAEKQLKRQWADNKEIETTMLMFQCLNAGNVVQNNMSMGDLNELSHMINHNLRKIGRRIESVDSENINQQNPIESQVMAAQSKVQLPMAPPPPLLPPPPPPPTVPDNDDIEMMSRLGWI 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04890 214 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vivi3g04890 214 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi3g04890 214 PANTHER MADS BOX PROTEIN 3 154 - -
Vivi3g04890 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vivi3g04890 214 MobiDBLite consensus disorder prediction 181 205 - -
Vivi3g04890 214 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vivi3g04890 214 MobiDBLite consensus disorder prediction 181 201 - -
Vivi3g04890 214 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi3g04890 214 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g04890 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi3g04890 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g04890 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04890 Vivi-Chr3 93127746 93128628 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04890 1 199 Type I MADS-box Gene Family AT5G48670 50.754 4.81e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04890 SRF-TF 3.4e-14 No_clan