Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04886 ATGACTAGAAAGAAGGTGAAGCTTGCTCTCATTGAGAACAATACCGCAAGGAAAGTAGCATACAAGAAAAGGAACAAGAGTTTATTGAGGAAGGTTGATGAAATATCAACCCTTTGCGGTATCGAGGCTTGTGCGATTATTTATGGCCCATACGATCCTCAGCCTGAGATCTGGCCATCACCGTCGGGAGTTGAAAAGGTGCTTTTGAAATTCAAGGCAGCGCCTGAATTTGATCAAAGCAGAAGGATGGTGGATCTAGAGAGTTTTCTGAAACATAGAATTTCCAAGGCTGAAAAGCAACTTAAAAGGCAATGGGCAGACAACAAAGAGACAGAGACAACCATGCTGATGTTTCAATGTCTCAATGCTGGGAATGTCGAGCAGAACGATATGTCGATGGATGTTTTGAATGATCTTTCTTGCATGATTGATCATAATTTGAGGAAGATTGGTAGAAGGATTGAATCAGGTGATAGTGAAAATATTAATCACCAAAATCCAATCGAAAGTCAAGTCATGGCTGCTCAAAGCCAAGTCCAACTCCCTATAGCACCGCCACCGCCACTACTACCACCACCACCACCAACCGAACCTGATAATGATGAAATTGCAATGATGAGTAGGTTGGGATGGCTATGA 639 0.4257 MTRKKVKLALIENNTARKVAYKKRNKSLLRKVDEISTLCGIEACAIIYGPYDPQPEIWPSPSGVEKVLLKFKAAPEFDQSRRMVDLESFLKHRISKAEKQLKRQWADNKETETTMLMFQCLNAGNVEQNDMSMDVLNDLSCMIDHNLRKIGRRIESGDSENINHQNPIESQVMAAQSQVQLPIAPPPPLLPPPPPTEPDNDEIAMMSRLGWL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04886 212 MobiDBLite consensus disorder prediction 182 202 - -
Vivi3g04886 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi3g04886 212 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vivi3g04886 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi3g04886 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g04886 212 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi3g04886 212 PANTHER MADS BOX PROTEIN 3 127 - -
Vivi3g04886 212 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi3g04886 212 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Vivi3g04886 212 MobiDBLite consensus disorder prediction 182 199 - -
Vivi3g04886 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Vivi3g04886 212 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04886 Vivi-Chr3 92966299 92966937 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04886 1 196 Type I MADS-box Gene Family AT5G48670 49.490 6.89e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04886 SRF-TF 4.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04886 - - vvo:131658566 322.783