Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04885 ATGACTAGAAAGAAGGTGAAGCTTGCTTTCATTGAGAATGATACTGCAAGGAAAACAACTTACAAGAAAAGGACGAAGGGTTTATTGAAGAAGGTCGAGGAATTATCAACCCTTTGCGGTATTGATGCTTGTGCGATAGTTTATGGCCCATATGATCCTCAACCTGAGATCTGGCCGTCGCCGTCGGGAGTTGAAAAGGTGCTTTTGAAATTCAAGGCAGCGCCTGAATTTGATCAAAGCAGAAGGATGGTGGATCTAGAGAGTTTTCTGAAACATAGAATTTCCAAGGCTGAAAAGCAACTTAAAAGGCAATGGGCAGACAACAAAGAGACAGAGACAACCATGCTGATGTTTCAATGTCTCAATGCTGGGAATGTCGAGCAGAACGATATGTCGATGGATGTTTTGAATGATCTTTCTTGCATGATTGATCATAATTTGAGGAAGATTGGTAGAAGGATTGAATCAGGTGATAGTGAAAATATTAATCACCAAAATCCAATCGAAAGTCAAGTCATGGCTGCTCAAAGCCAAAGCCAAGTCCAACTCCCTATGGCACCGCCTCCGCCACTACTACCACCACCGCCACCACCACCAACCGTACCTGATAATGATGTTATTGAAATGATGAGTAGGTTGGGATGGGTATGA 651 0.4286 MTRKKVKLAFIENDTARKTTYKKRTKGLLKKVEELSTLCGIDACAIVYGPYDPQPEIWPSPSGVEKVLLKFKAAPEFDQSRRMVDLESFLKHRISKAEKQLKRQWADNKETETTMLMFQCLNAGNVEQNDMSMDVLNDLSCMIDHNLRKIGRRIESGDSENINHQNPIESQVMAAQSQSQVQLPMAPPPPLLPPPPPPPTVPDNDVIEMMSRLGWV 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04885 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi3g04885 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g04885 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi3g04885 216 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vivi3g04885 216 MobiDBLite consensus disorder prediction 183 203 - -
Vivi3g04885 216 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Vivi3g04885 216 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi3g04885 216 MobiDBLite consensus disorder prediction 176 203 - -
Vivi3g04885 216 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi3g04885 216 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g04885 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vivi3g04885 216 PANTHER MADS BOX PROTEIN 3 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04885 Vivi-Chr3 92900973 92901623 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04885 1 201 Type I MADS-box Gene Family AT5G48670 50.249 2.52e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04885 SRF-TF 2.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04885 - - vvo:131658566 309.686