LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g04879	ATGACTAGAAAGAAGGTGAAGCTTGCTTTCATTGAGAATAATACTGCAAGGAAAACAACTTACAATAAAAGGAAGAAGGGTTTATTGAAAAAGGTCGATGAAATATCAACCCTTTGCGGTATCGATGCTTGTGCGATAGTTTATGGCCCATACGATCCTCAACCTGAGATCTGGCCATCTCCGTCGGGAGTTGAAAAGGTGCTTACGAAATTCAAGGCAGTGCCTGAATTTGATCAAAGCAGAAGAATGGTGGATCAAGAGAGTTTTCTGAAACAAAGAATTGGGAAGGCTGAAAAGCAACTTAAAAGGCAATGGGCAGATAACAAAGAGAAAGAGACAACCATGCTGATGTTTCAGTGTCTCAATGCTGGGAATGTCGAGCAGAACGATATGTCGATGGATGTTTTGAAAGATCTTTCTTGCATCATTGATCATAATTTGAGGAAGATTGGTAGAAGGATTGAATCAGGTGATAGTGAAAATGTTATTCATCAGAATAAAAGTGAAAGTCAAGTCATGGCTGCTCAAAGCCAAGTCCAATAG	543	0.3959	MTRKKVKLAFIENNTARKTTYNKRKKGLLKKVDEISTLCGIDACAIVYGPYDPQPEIWPSPSGVEKVLTKFKAVPEFDQSRRMVDQESFLKQRIGKAEKQLKRQWADNKEKETTMLMFQCLNAGNVEQNDMSMDVLKDLSCIIDHNLRKIGRRIESGDSENVIHQNKSESQVMAAQSQVQ	180

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g04879	180	Gene3D	-	13	97	IPR036879	GO:0003677\|GO:0046983
	Vivi3g04879	180	ProSiteProfiles	MADS-box domain profile.	1	49	IPR002100	GO:0003677\|GO:0046983
	Vivi3g04879	180	FunFam	agamous-like MADS-box protein AGL80	13	97	-	-
	Vivi3g04879	180	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Vivi3g04879	180	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Vivi3g04879	180	SUPERFAMILY	SRF-like	2	94	IPR036879	GO:0003677\|GO:0046983
	Vivi3g04879	180	CDD	MADS_SRF_like	2	85	IPR033897	GO:0000981\|GO:0000987\|GO:0045944
	Vivi3g04879	180	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Vivi3g04879	180	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	50	IPR002100	GO:0003677\|GO:0046983
	Vivi3g04879	180	PANTHER	MADS BOX PROTEIN	3	129	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g04879	Vivi-Chr3	92780683	92781225	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g04879	1	155	Type I MADS-box Gene Family	AT5G48670	57.419	4.81e-55	175

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Vivi3g04879		SRF-TF	3.5e-17	No_clan