Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04872 ATGACTAGAAAGAAGGTGAAGCTTGCTTTCATTGAGAATGATACTGCAAGGAAGACAACTTACAAGAAAAGGAATAAGGGTTTATTGAAGAAGGTTGATGAAATATCAACCCTTTGTGGTATCGATGCTTGTGCGATTGTTTATGGCCCATACGATCCTCAACCTGAGATCTGGCCATCACCGTCGGGAGTTGAAAAGGTGCTTTTGAAATTTAAGACAGCGCCTGAGTTTGATCAAAGCAGAAGGATGGTGGATCAAGAGAGTTTTCTCAAACAAAGAATTTCCAAGGCTGAAAAGCAACTTCAAAAACAACGGGGAGACAACAAAGAAAAAGAGAAAAGCATGCTCATGTTTGAGTGTCTCAGTGCTGGGAACATCGTCCAGAACAATATGTCTGTAGGTGATTTGAATGATCTTTGTTGGATGATTGATCATAATTTGAGGGTGATTGGGAGAAGGATTGAATCACTTGATAGTGAAAATATAATTCACCAAAATCAAAGTGAAAGTCAAGTCATGGCTGCTCAAATCCCAATGGCACAGCCACTGCCACTCCTACCACCACCGCCGCCACCACCAACTGTGTCTGATAATAATGATGAAATTGAAATGATGAGTAGGTTGGGATGGATATGA 636 0.4088 MTRKKVKLAFIENDTARKTTYKKRNKGLLKKVDEISTLCGIDACAIVYGPYDPQPEIWPSPSGVEKVLLKFKTAPEFDQSRRMVDQESFLKQRISKAEKQLQKQRGDNKEKEKSMLMFECLSAGNIVQNNMSVGDLNDLCWMIDHNLRVIGRRIESLDSENIIHQNQSESQVMAAQIPMAQPLPLLPPPPPPPTVSDNNDEIEMMSRLGWI 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04872 211 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi3g04872 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g04872 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi3g04872 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi3g04872 211 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vivi3g04872 211 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi3g04872 211 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g04872 211 PANTHER MADS BOX PROTEIN 3 129 - -
Vivi3g04872 211 Coils Coil 87 114 - -
Vivi3g04872 211 Gene3D - 13 117 IPR036879 GO:0003677|GO:0046983
Vivi3g04872 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04872 Vivi-Chr3 92670464 92671170 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04872 1 195 Type I MADS-box Gene Family AT5G48670 51.282 6.22e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04872 SRF-TF 1.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04872 - - vvo:131658566 295.434