Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04865 ATGAAAACAATGGACAAAGACATATCAAACTGGGTCATGGAGTTTCTCCTTCGAAGCTCCGTTCCCGATTCCCTCATCCATAAAACCCTAACCGTTCTTCCACTCTCCGGCGCCGATTCTCGTCTCAAAAAAACCCTCCTCCTCCGTACCCTCCAAACTCACCTCCGCACCGCCTCCCTCTCCGAAACCTCTCTCCAAATCATCGAATCCCTCGAGGAGCTTTACCGCAGAGATGAGATTCGTGTCTCCGCGGCAATGCGCAGCGCTTATTGCGCTGTTGCTGTTGAGTGTACCGTGAAATATCTTATTACTTCCCATGAGGATCCGTCCGGGGAGTATTTTTCCGCTGTTCGACGGATCTGGCGTGGTCGGGTTGTTCAATTGTCGGCTGAGGGACAGAGGAGTGAGCTTCTATCGGACGAGTTGTCGCGGTGGGGAGAGGACATTGAGGCTGCGCTTTGGGATGTTAGGGCTTCGGAGAGGCTTGCGGGTTTGAATACAAGGAGAGATGCGATGAATGAGGTTCAGAGGTTTTTGAAGGATGCGTGGCAAGTTATGGGACCTTCGTTTCTTGATTCGATGGCGATGGTCTCTAAAGGGAATGGTTTACGTCCTGAAGGTGTCTGTGGAAATGCTTCGGGTAGTGAAAAGTTGAAGAAGAGTGATGGAAGGTTAGATAGTTTGGGAAAGGAGAAAATGTGTTCTGTTGTGGATGATAACAATGATAATGATAATGTTGATGATGGTGGTGGTGATGATGATGATGACGTGGCAGTGATGGGTGAAAACCATGGGAATGAAAGATTGGAAGAGAGAGTTGGTACTTCTGTTGATGCAGATCAGGAAGTGGGTGGGTGTGATTCTTCAAATGTAGATAAAGAAATTTGGGAAGGCAATGTCCGGCTCAAACGCAAGCACTCTGCATTACGAACATGCCATAGGGGAGTTAAAATCTCTGGTGCTAAGGAAATGAGGGCAACAAATTTATCGAGTAAATATAAAATCTTGCCTAGTCCTGAAGTAGAGAAAGTCCGGGAATCCCTTAAATCAAGTTCTATGGAGTTAAAGGCATTGGTCAAGGATCCTCTTCCTGATGCATTGCGATCATCTGAAGATGTAAGATCCAAATTGGCAACAAAACATATAAATCTTGGGCCACCAAGTGAAAATCAGAGTGGACCTGTAGATGTACGGCGTTCAGATGGATGCCAAACTATTGTACTTTATCAGGCTAAGGCTAATGATGCCAATCTTGCAAAGAAGTCTTCTGTTCCTTGTAGTAATGATCGCCGCCCCAACTTTATGGGGCGGGCAAGTTCTGCTCATACTTACGAGTGGGATGATTCAATTGATAACTCACTACAAGCTAGACAGCCAAGAAGGAAGAAAAGGAAATGGACTTCATTGGAAGAGGAGACACTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAACTGGCGGACAATTCGAGACTTTTACAGCAACATATTTGAATATAGAAGTGGAGTTGATCTAAAAGACAAGTGGAGAAATATGATGCGGTGA 1545 0.4563 MKTMDKDISNWVMEFLLRSSVPDSLIHKTLTVLPLSGADSRLKKTLLLRTLQTHLRTASLSETSLQIIESLEELYRRDEIRVSAAMRSAYCAVAVECTVKYLITSHEDPSGEYFSAVRRIWRGRVVQLSAEGQRSELLSDELSRWGEDIEAALWDVRASERLAGLNTRRDAMNEVQRFLKDAWQVMGPSFLDSMAMVSKGNGLRPEGVCGNASGSEKLKKSDGRLDSLGKEKMCSVVDDNNDNDNVDDGGGDDDDDVAVMGENHGNERLEERVGTSVDADQEVGGCDSSNVDKEIWEGNVRLKRKHSALRTCHRGVKISGAKEMRATNLSSKYKILPSPEVEKVRESLKSSSMELKALVKDPLPDALRSSEDVRSKLATKHINLGPPSENQSGPVDVRRSDGCQTIVLYQAKANDANLAKKSSVPCSNDRRPNFMGRASSAHTYEWDDSIDNSLQARQPRRKKRKWTSLEEETLRAGVKMFGEGNWRTIRDFYSNIFEYRSGVDLKDKWRNMMR 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04865 514 SUPERFAMILY Homeodomain-like 459 513 IPR009057 -
Vivi3g04865 514 CDD SANT_TRF 464 514 - -
Vivi3g04865 514 PANTHER MYB TRANSCRIPTION FACTOR 4 514 - -
Vivi3g04865 514 Pfam Myb-like DNA-binding domain 463 512 IPR001005 -
Vivi3g04865 514 MobiDBLite consensus disorder prediction 236 255 - -
Vivi3g04865 514 ProSiteProfiles Myb-like domain profile. 458 513 IPR001005 -
Vivi3g04865 514 SMART sant 462 514 IPR001005 -
Vivi3g04865 514 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 458 514 IPR017930 -
Vivi3g04865 514 MobiDBLite consensus disorder prediction 241 255 - -
Vivi3g04865 514 Gene3D - 454 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04865 Vivi-Chr3 92362927 92367151 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04865 466 513 Single Myb Histone (SMH) Gene Family AT1G15720 52.083 9.96e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi3g04865 Myb_DNA-binding 1.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04865 - - tpra:123916300 615.15