Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04857 ATGGTTAAAGATATTCCTTTCATTGCTTTATGCATACTAACTTTGAGTTTAGCTTTTCTCCTGAAAAAACTTCTCTCAAAAAGTCAAACAAAAAATGTTCCAAAAGGGTCACTTGGATATCCTATTATTGGAGAGACACTTGGTTTTCTAAGAGCACAGAGACAAGACAAAGGCTATGAGTGGTTACAAGAAAGGGTATCTAAGTATGGTTCTGTCTTTAAAACCTCCTTAATGGGTTCTCCAACAGTGATTATTATTGGACAACAAGGAAACAAGTTTATTCTTGGTTCCTCAGATGATGTTATTTCTGCTAAGAAACCTATAACTCTTCAAAAGATACTTGGAAAGCAAAGCTTATCAGAACTTGTAGGATCAAGGCACAGGTTGGTCAAAGGTGAACTGCTGAAATTCTTGAAACCTGAATGCCTTCAGAACTATGTCAAAAAGATGGATGAGTTAGTGCACACAACACTTCTAAAAGAATTGAAAGGGAATAAAACAATACAAGTTGTGAGGTTGATGAAAAAACTGGCCTATGATATGACATCCAGCATCTTATTTGACATAGATCAACACACAAGGGAGATTCTATTTGATGACTTTACCACATCATTTAAAGCAATTCACTCTCTTCCAATAAATCTCCCTGGCTCATCATTTTGGAGAGGCCAAAAAGCTAGAGCAAGAATTGTGGAAATGATACTTCCTATTATGAACGAAAGACGGCAAGAATTATCAAAAGGGGTTCTAAGTTCTACAAATGATATGCTTTCATGCCTTCTCGCAATAAGAGATGAAAATGATAAGCCTTTAAACGACGACTTAATTACCGACAATTTTGTTTTTATGTTTGTTGCAAGTCATGACACATCTGCTACTCTCATGACATTGATGATATGGAAGTTATCTAGAGATCAAGAGGTTTATAACAAAGTTTTAGAAGAACAAATGGAGATTTTAAAGCAAAGGAATGAAAATGAAGAGAGGTTAACATGGGGAGAGATACAAAAGATGAAATACACATGGAGAGTTGCTCAAGAATTGATGAGGATGATCCCTCCTTTGTTTGGTGGATTTAGGAAAGCACTTAAAGATACTAGTTACCTAGGATATGACATACCAAAAGGATGGCAGGTATATTGGGCATCATGTGGAACACATATGGACAAAGATATATTCGAGAATCCAGACAAGTTTGATCCATCTCGTTTTGAAAATCAAACAAAGTCAATCCCACCCTTTTCTTACCTTCCATTTGGTGCAGGGTCTCATAATTGCATAGGAAATGAGTTTGCTAGGGTTCAGACATTAACTACCATTCACAATTTTGTGAAGTTGTACGAATGGTCTAAATTGAATCCAAAGGAAACTCTTACTCGTCAACCAATGCCTTATCCATCATTGGGCCTTCCAATTAAGATCAAACCAAGATGTAATATGTCTTAA 1446 0.3603 MVKDIPFIALCILTLSLAFLLKKLLSKSQTKNVPKGSLGYPIIGETLGFLRAQRQDKGYEWLQERVSKYGSVFKTSLMGSPTVIIIGQQGNKFILGSSDDVISAKKPITLQKILGKQSLSELVGSRHRLVKGELLKFLKPECLQNYVKKMDELVHTTLLKELKGNKTIQVVRLMKKLAYDMTSSILFDIDQHTREILFDDFTTSFKAIHSLPINLPGSSFWRGQKARARIVEMILPIMNERRQELSKGVLSSTNDMLSCLLAIRDENDKPLNDDLITDNFVFMFVASHDTSATLMTLMIWKLSRDQEVYNKVLEEQMEILKQRNENEERLTWGEIQKMKYTWRVAQELMRMIPPLFGGFRKALKDTSYLGYDIPKGWQVYWASCGTHMDKDIFENPDKFDPSRFENQTKSIPPFSYLPFGAGSHNCIGNEFARVQTLTTIHNFVKLYEWSKLNPKETLTRQPMPYPSLGLPIKIKPRCNMS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04857 481 PANTHER CYTOCHROME P450 26 31 466 - -
Vivi3g04857 481 Coils Coil 310 330 - -
Vivi3g04857 481 Gene3D Cytochrome P450 23 477 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g04857 481 Pfam Cytochrome P450 34 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g04857 481 SUPERFAMILY Cytochrome P450 31 477 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g04857 481 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 419 428 IPR017972 GO:0005506|GO:0016705
Vivi3g04857 481 PRINTS E-class P450 group IV signature 60 83 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g04857 481 PRINTS E-class P450 group IV signature 338 354 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g04857 481 PRINTS E-class P450 group IV signature 426 444 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g04857 481 PRINTS E-class P450 group IV signature 410 426 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g04857 481 PRINTS E-class P450 group IV signature 387 405 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g04857 481 FunFam Taxadiene 5-alpha hydroxylase 24 477 - -
Vivi3g04857 481 PRINTS P450 superfamily signature 286 303 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g04857 481 PRINTS P450 superfamily signature 343 354 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g04857 481 PRINTS P450 superfamily signature 417 426 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g04857 481 PRINTS P450 superfamily signature 426 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g04857 481 CDD CYP90-like 65 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04857 Vivi-Chr3 92178227 92181764 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04857 4 481 Cytochrome P450 AT4G19230 32.924 3.02e-76 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04857 - - gmx:100790209 757.673