Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04841 ATGGGTTCTGACATTGGTATCGTCAATGGTTCGTGTGTTCATGAATGGAAGAAAGGATGGCCTTTACGATCTGGTGGATTCACTCAGCTTTGCATCAAGTGCGGATTTGTAGAGGAATGGAAGTGTGACATCATTGAATCATTATCTGCCTATGAGAATTCAGTTTTCTGTAATAAATTCCACCGGAATCAAACGGGTTGGCGAGAGTGTAACTTTTGCAAAAAGCCTATCCACTGCGGATGCATAGTATCTAGATCTTTGTTCGAGTATCTTGACTTCGGTGGTATAGGTTGTGTTAGCTGCGTAAATACTTCCCAACTTAATATGATGAGGAATACTGAAAATCCTAACTGGCCCGTTTCTACGGCCCAAAATAACGCAAGGGATATGCATTCTGCTCATTTTGATGGCAGAATGTTAATGAGCAATGTCGATGAAGGTAAACTCATGCAATTATGCAGAGTTGTTGAAGCTAGCGAATCCGTCCATATTAACCATGCTCCGAGAGACGGCGCGATTACCTGTAACGGAAAAAACAATCAAGAAGTTAAGCCTTCATTCAAGGAAGGGGATACTGGATTTTCAAATATGATTAAACCGTCTGCTCAGTCATTAACTTTTGCTACATTTGAAAGTAATAGACCAACATGGGAGATTAAAAACATGCATGAGTCAAATGTCAAGCCGTCTTTGAATATGTGTTTGGGAAACCCTTCAGGGAGCAACTCTTTTCCACCTTCGGTAGGAGAGAATATAGAAGGAAGACTCGAGGGGAAAGTATCTCCTCCCTTTCATCAAGGGCCAAGAACTCGCCCTATATTGCCCAAATTATTGAAAACTGGCCTTACCATGAAAGTAGAAACTGAAAAAGGGATGATTAATCCACCACGCATTGCCCGGCCTCCTGCTGATGGAAGGGGCAAGAATCAGTTACTTCCTAGATATTGGCCAAGGATTACGGATCAGGAGCTGGAGCGTTTGTCTGGAGATTTGAAATCCACTGTAGTGCCTCTGTTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCTTATTTTCCTCATATATCCCATTCCGAAGGCCTTCCCTTACGGGTCCAAGACGTGAAGGGGAATGAATGGACTTTTCAGTTCAGATTTTGGCCTAATAACAACAGCAGGATGTACGTATTGGAGGGTGTGACCCCTTGCATACAGGCCATGGAGTTACGTGCTGGTGATACCGTTACATTTAGTCGGATAGATCCTGGGGGAAAACTTGTTATGGGTTTCAGAAAGTCATCAAATTCCCTAGATACACCGGACGTTCCTAATGGTATTCTGGCAAAGGGAGCCACCTTTTCTGGTGGAACCGAGAATCTTCCATTGGGAAGTAATTGTGCCGATCTTCTCCATTCAACGAAAGGGAATGGGGAGCCTCACTTAAATGGTCATCCAAGACCTCCTCATTTGAGTCCCGGAGCTGCTGGTTTGCTTAAAACTGAAAACGGTGAGATGACAAACAATAATTCACTGGACCAAAAAATTTCATCTTTAGAAAAGAAGAGGACTCGAAATATTGGTCTCAAAAGTAAGAGATTGCTCATTGGTAATGAAGATGCTATGGAGTTGAGACTTACATGGGAAGAAGCACAGGACTTACTTCGTCCGCCGCCTCGTGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGTATTTGAAGAATATGATGAACCCCCGGTTTTCGGAAAGAGAACAATATTCAGCGCCTCTTTATCTGGGGCGAAGGAACAATGGGCTCAATGTGATGATTGCTCAAAATGGAGAAAGTTACCGGTCGATGCTCTTCTTCCTCCCAAGTGGACATGTTCTGAAAATGTTTGGGATACAACCAGATCTTCATGTTCTGCGCAAGAAGAGCTGAGTGCAAGAGAATTAGAAAATCTTTTGAAATCCAGCAAAGATTTTAAGAAGCGACGGATCATAGAAAACAGCAAGTTGATCCAAGAACACGAGCCTTCTGGCTTAGACGCGCTCGCAAGTTTAGCAGTTTTAGGAGAAAACTTCATCGACCCTACTGATTCCTCAGCTGGAGCCACCACTAAACATCCTAGACACCGCCCCGGCTGCTCTTGTATCGTGTGCATTCAGCCCCCAAGCGGGAAAGGGAGACACAAGCCAACATGTACTTGCAACGTGTGCATGACAGTGAAGCGTCGGTTCAAAACCCTTATGCTACGCAAGAAGAAACGCCAATCCGATCGCGAAGCAGATGCCGATGCCAAGAAAGACCATACTCGCAAGCCTGATACCGATGGAGCATCTGGAGCAACAAGAGATAACGCAAATCCTTTGGATAAAGAGGAAGGAATAAATAGAGGTCAAACCGAAGTCGGCGAGTCCAGTGCCGGACAGATAGATCTAAACTGTGATCCAAATCGCGACGAATCACAAGTGGATAATAATAATATCCCAAAACTTAGTCATCGAGTATGGGAAGATATGAAGATGAATATGAACCAGAATGGTGGTGTAAAAACCATCAATACTGAAGTGCAGGAAGATCAGCATTCTTCTTTGGTCACTAAATCAAATGGTGAAGATAAGAGATACTTGCCTGATGAAATTGCATCCATTGTTAGGAACAAAGAAAAAAGAGATGAGGTATATTCAAATGAAAGTCAAAACAATCTGTCTTAA 2715 0.4357 MGSDIGIVNGSCVHEWKKGWPLRSGGFTQLCIKCGFVEEWKCDIIESLSAYENSVFCNKFHRNQTGWRECNFCKKPIHCGCIVSRSLFEYLDFGGIGCVSCVNTSQLNMMRNTENPNWPVSTAQNNARDMHSAHFDGRMLMSNVDEGKLMQLCRVVEASESVHINHAPRDGAITCNGKNNQEVKPSFKEGDTGFSNMIKPSAQSLTFATFESNRPTWEIKNMHESNVKPSLNMCLGNPSGSNSFPPSVGENIEGRLEGKVSPPFHQGPRTRPILPKLLKTGLTMKVETEKGMINPPRIARPPADGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISHSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMELRAGDTVTFSRIDPGGKLVMGFRKSSNSLDTPDVPNGILAKGATFSGGTENLPLGSNCADLLHSTKGNGEPHLNGHPRPPHLSPGAAGLLKTENGEMTNNNSLDQKISSLEKKRTRNIGLKSKRLLIGNEDAMELRLTWEEAQDLLRPPPRVKPSIVTIEDQVFEEYDEPPVFGKRTIFSASLSGAKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDTTRSSCSAQEELSARELENLLKSSKDFKKRRIIENSKLIQEHEPSGLDALASLAVLGENFIDPTDSSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSDREADADAKKDHTRKPDTDGASGATRDNANPLDKEEGINRGQTEVGESSAGQIDLNCDPNRDESQVDNNNIPKLSHRVWEDMKMNMNQNGGVKTINTEVQEDQHSSLVTKSNGEDKRYLPDEIASIVRNKEKRDEVYSNESQNNLS 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04841 904 FunFam B3 domain-containing transcription repressor VAL1 317 444 - -
Vivi3g04841 904 SMART B3_2 339 439 IPR003340 GO:0003677
Vivi3g04841 904 SUPERFAMILY DNA-binding pseudobarrel domain 337 441 IPR015300 -
Vivi3g04841 904 Pfam CW-type Zinc Finger 603 645 IPR011124 GO:0008270
Vivi3g04841 904 Pfam B3 DNA binding domain 339 438 IPR003340 GO:0003677
Vivi3g04841 904 MobiDBLite consensus disorder prediction 750 827 - -
Vivi3g04841 904 MobiDBLite consensus disorder prediction 800 827 - -
Vivi3g04841 904 ProSiteProfiles B3 DNA-binding domain profile. 339 440 IPR003340 GO:0003677
Vivi3g04841 904 ProSiteProfiles Zinc finger CW-type profile. 598 648 IPR011124 GO:0008270
Vivi3g04841 904 MobiDBLite consensus disorder prediction 855 874 - -
Vivi3g04841 904 MobiDBLite consensus disorder prediction 754 779 - -
Vivi3g04841 904 Gene3D - 317 444 IPR015300 -
Vivi3g04841 904 CDD B3_DNA 337 438 IPR003340 GO:0003677
Vivi3g04841 904 Gene3D - 594 647 - -
Vivi3g04841 904 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 8 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04841 Vivi-Chr3 91523373 91529296 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04841 1 874 B3 DNA Binding Superfamily AT2G30470 46.441 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g04841 B3 1.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04841 K09287 - gmx:100789848 1358.58