Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04830 ATGACTAGAAAAAAGCTGAAGCTAGCTTTCATTGAGAAGGATACCGCAAGAAAATTAGCATACAAGAATAGGAAGAATAGTTTACTGAAGAAGGTTGATGAACTAACAACCCTTTGCGATATCGATGCTTGTGCTATCATTTTTGGCCCATACGATCCTCAACCTGAGATCTGGCCATCGTCGTCCGGGGTACAAGATGTGCTTTCGAAATTCCTGACAACGCCAGAGTTTGATCAAAGAAAAAAGATGGTGACTCAGGAGAGTTTTCTGAAACAAAGGGTTGAGAAGGCTGAAAAGCAACTTAGAAAGCAATTGAGGGACAACAAAGAAAATGAGACAACGATGCTCATGTTTCAATGTCTCAATGCTGGGGGGATCGTGCCGAACGACAGTTCGGTGGCTGGTTTGAATGATCTTACATGGATGATTGATAAGAATCTGAGGGAGATTGGCAGAAGGATAGAATCAATTGATAGCAACAATAATAATCATCAAAATCAAAATGAAAATCAAGTTGCCACCGCTCAAAGCCAAGAACAACTCCAGGTGGATCCACCTCTGCCACTACTACCACCACCGCCACCGCCACCACCACCAACAGTGTCTGATATTGATGAAGTTGAAATGATGAGTAGGTTGGGATGGATATGA 651 0.4255 MTRKKLKLAFIEKDTARKLAYKNRKNSLLKKVDELTTLCDIDACAIIFGPYDPQPEIWPSSSGVQDVLSKFLTTPEFDQRKKMVTQESFLKQRVEKAEKQLRKQLRDNKENETTMLMFQCLNAGGIVPNDSSVAGLNDLTWMIDKNLREIGRRIESIDSNNNNHQNQNENQVATAQSQEQLQVDPPLPLLPPPPPPPPPTVSDIDEVEMMSRLGWI 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04830 216 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi3g04830 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g04830 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi3g04830 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi3g04830 216 Coils Coil 80 114 - -
Vivi3g04830 216 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi3g04830 216 MobiDBLite consensus disorder prediction 157 183 - -
Vivi3g04830 216 MobiDBLite consensus disorder prediction 185 202 - -
Vivi3g04830 216 Gene3D - 14 118 IPR036879 GO:0003677|GO:0046983
Vivi3g04830 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi3g04830 216 Coils Coil 147 167 - -
Vivi3g04830 216 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vivi3g04830 216 PANTHER MADS BOX PROTEIN 3 151 - -
Vivi3g04830 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vivi3g04830 216 MobiDBLite consensus disorder prediction 157 204 - -
Vivi3g04830 216 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04830 Vivi-Chr3 91020231 91020989 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04830 1 196 Type I MADS-box Gene Family AT5G48670 48.980 1.98e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04830 SRF-TF 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04830 - - vvo:131640499 383.645