Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04828 ATGGCTAGAAAAAAGTTGAAACTTGCTTTCATTGAGAATAATAACGCAAGGAAATCAGCATACAGGAATAGGAAGAAGGGTTTAGTGAAGAAGGTTGATCAACTAGCAACCCTTTGCGGTATCGAGGCTTGTGCAATAATTTATGGCCCCGACGATCATCATCCTGTAGTCTGGCCATCGCCGTCCGGAGTCCAAAATGTGATTTCGAAATTCATGACAGCGCCTGAGTTTGAACAAAGAAAAAAGATGGTGAATCAAGATAGTTTTCTGAATCAAAGGATTTCAAAGGCTCAAATGAAACTTAAAAAGCAATCGAGAGACAACCGAGAGAAAGAGACTACCATGCTGATGTTTCATTGCCTCGATGCTGGGAAGGTCGTGCAAAACGATATGTCGGGGGCTGGTTTAAATGATCTTGCCTGGATGATTGATCAGAACTTGAAAAAGATTGATAGAAGGTTGGAATCAGGTGATAACGAAATGAATATTCGCCAAAATGAATGTGAAAATGAAATCATGACAGCTCAAAGGCAAGACCAACTCCACATGGAACAGCCACTGCTACTACCACTGCCGCCGCCGCTACCACCAACCACGGCCAATAATGGTGAAATTGCAATGATGAGTGATGGCCATCTCCAAACGGCACCACCACTGCCACTCCTACCACCACCACCACCACCAACCGCGCCTAATAATGATGAAATGGCATTGATGGGTCATGGCCATGTTGGGATGGCTACGAATAACAATGACATGATGTTTATGGACATGTTGATGAATGATGATGAATGGTGGTGA 801 0.437 MARKKLKLAFIENNNARKSAYRNRKKGLVKKVDQLATLCGIEACAIIYGPDDHHPVVWPSPSGVQNVISKFMTAPEFEQRKKMVNQDSFLNQRISKAQMKLKKQSRDNREKETTMLMFHCLDAGKVVQNDMSGAGLNDLAWMIDQNLKKIDRRLESGDNEMNIRQNECENEIMTAQRQDQLHMEQPLLLPLPPPLPPTTANNGEIAMMSDGHLQTAPPLPLLPPPPPPTAPNNDEMALMGHGHVGMATNNNDMMFMDMLMNDDEWW 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04828 266 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi3g04828 266 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi3g04828 266 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi3g04828 266 Coils Coil 94 114 - -
Vivi3g04828 266 PANTHER MADS BOX PROTEIN 3 154 - -
Vivi3g04828 266 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g04828 266 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Vivi3g04828 266 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Vivi3g04828 266 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04828 Vivi-Chr3 90842362 90843191 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04828 1 155 Type I MADS-box Gene Family AT5G48670 54.839 8.96e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04828 SRF-TF 8.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04828 - - vvo:131658560 444.121