Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04817 ATGACTAGAAAAAAGCTAAAGCTTGCTTTCATTGAGAAGGATACCGCAAGGAAACTAGCATACAAGAATAGGAAGAATAGTTTAGTGAAGAAAGTTGATGAACTTACAACCCTTTGCGGTATCGATGCTTGTGCTATTATTTATGGCCCATACGATCCTCAACCTGAGATCTGGCCATCTCCGTCCGGAGTACAAAATGTGCTTTCGAAGTTTAAGACAGCGTCTGAGTTTGATCAAAGAAAAAAGATGGTGAATCAGGAGAGTTTTTTGAAACAAAGGGTTGAGAATGCTGAAAAGAAACTTAAAAAGCAATTGAGAGACAACAAAGATAAAGAGACAACCATGCTCATGCTTCAATGTCTCAATGCTCGGGGGATCGTGCCGAACGACAGTTCGGTGGATGGTTTGAATGATCTTACATGGATGATTGATAAGAATCTGAAGGAGATTGGCAGAAGGATAGAATCAATTGATAGCAACAGTAATATTCCTCAAAACCAAAATGAAAATCAAGTTGCCACCGCTCAAAGCCAAGAACAACTCCAAGTGGATCCGCCTCTGCCACTACTACCACCGCCGCCAGCACCAACAGTGTCTGATATTGATGAAGTTGAAATGATGAGTAGGTTGGGATGGCTATGA 642 0.4128 MTRKKLKLAFIEKDTARKLAYKNRKNSLVKKVDELTTLCGIDACAIIYGPYDPQPEIWPSPSGVQNVLSKFKTASEFDQRKKMVNQESFLKQRVENAEKKLKKQLRDNKDKETTMLMLQCLNARGIVPNDSSVDGLNDLTWMIDKNLKEIGRRIESIDSNSNIPQNQNENQVATAQSQEQLQVDPPLPLLPPPPAPTVSDIDEVEMMSRLGWL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04817 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vivi3g04817 213 Coils Coil 80 114 - -
Vivi3g04817 213 PANTHER MADS BOX PROTEIN 3 154 - -
Vivi3g04817 213 MobiDBLite consensus disorder prediction 158 199 - -
Vivi3g04817 213 MobiDBLite consensus disorder prediction 158 183 - -
Vivi3g04817 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi3g04817 213 Gene3D - 14 116 IPR036879 GO:0003677|GO:0046983
Vivi3g04817 213 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi3g04817 213 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi3g04817 213 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g04817 213 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04817 Vivi-Chr3 90550124 90550765 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04817 1 199 Type I MADS-box Gene Family AT5G48670 49.000 1.07e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04817 SRF-TF 5.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04817 - - vvo:131640499 346.28