Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi3g04812 | ATGGGTAGAACAAAGGTGAAACTAGCTTTCATTGAGAATGATGCTGCAAGGAAATCAACATATAAGAAAAGGAAGAATGGTGTATTGAAGAAAGTTGATGAACTAAGCACACTTTGTGGAATTGAAGCTTGTGCCATAATTTTTGGTCCGTATGATCCTCAACCTGAGATTTGGCCAGCACAGGTGGGAGTCCAAAAGGTTCTCTCAAAATTCATGACAGTGCCTGAAATTGAGAAAAGCAAAAAAATGGTGATTCAAGAGATTTTCTTGAAACAAAGGATTATGAAGGTTAAGGAGAAATTAAACAAGCAAAGGAGAGAGAATTGGGAGAAGGAGATGACCATGCTCGTGTTTCAATGTCTCAATGCAGGGAAAATTGTGTACAACAATATCGCAGTGACTGATTTGAAAAATCTATCTTGGATGATGGACAAGAATTTGAAACATATCTGTAGAAGGTTGGAGGGAGAGGATAGTTGCAGTATTAATAGTCAAGACCAGCCTAAAATGGCAGCACTACCACCACCAACAACATCCCAGAATGAAACACTTGAAATGAATAATGCTGACACTATCACAATGAATGATCATGGGGAGGAAGCAATACTGTTTGGTAATGATGCTCAAATTCAAAATGAGTTTTGGAGTAATCTTTAA | 657 | 0.3775 | MGRTKVKLAFIENDAARKSTYKKRKNGVLKKVDELSTLCGIEACAIIFGPYDPQPEIWPAQVGVQKVLSKFMTVPEIEKSKKMVIQEIFLKQRIMKVKEKLNKQRRENWEKEMTMLVFQCLNAGKIVYNNIAVTDLKNLSWMMDKNLKHICRRLEGEDSCSINSQDQPKMAALPPPTTSQNETLEMNNADTITMNDHGEEAILFGNDAQIQNEFWSNL | 218 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi3g04812 | 218 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677|GO:0046983 | |
Vivi3g04812 | 218 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Vivi3g04812 | 218 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Vivi3g04812 | 218 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Vivi3g04812 | 218 | FunFam | agamous-like MADS-box protein AGL80 | 13 | 97 | - | - | |
Vivi3g04812 | 218 | SUPERFAMILY | SRF-like | 1 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Vivi3g04812 | 218 | Gene3D | - | 13 | 96 | IPR036879 | GO:0003677|GO:0046983 | |
Vivi3g04812 | 218 | PANTHER | MADS BOX PROTEIN | 3 | 151 | - | - | |
Vivi3g04812 | 218 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 50 | IPR002100 | GO:0003677|GO:0046983 | |
Vivi3g04812 | 218 | CDD | MADS_SRF_like | 2 | 84 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
Vivi3g04812 | 218 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi3g04812 | Vivi-Chr3 | 90399691 | 90400347 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi3g04812 | 1 | 179 | Type I MADS-box Gene Family | AT5G48670 | 48.187 | 3.58e-51 | 166 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Vivi3g04812 | SRF-TF | 7.8e-17 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi3g04812 | - | - | vvo:131636391 | 271.552 |