Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04812 ATGGGTAGAACAAAGGTGAAACTAGCTTTCATTGAGAATGATGCTGCAAGGAAATCAACATATAAGAAAAGGAAGAATGGTGTATTGAAGAAAGTTGATGAACTAAGCACACTTTGTGGAATTGAAGCTTGTGCCATAATTTTTGGTCCGTATGATCCTCAACCTGAGATTTGGCCAGCACAGGTGGGAGTCCAAAAGGTTCTCTCAAAATTCATGACAGTGCCTGAAATTGAGAAAAGCAAAAAAATGGTGATTCAAGAGATTTTCTTGAAACAAAGGATTATGAAGGTTAAGGAGAAATTAAACAAGCAAAGGAGAGAGAATTGGGAGAAGGAGATGACCATGCTCGTGTTTCAATGTCTCAATGCAGGGAAAATTGTGTACAACAATATCGCAGTGACTGATTTGAAAAATCTATCTTGGATGATGGACAAGAATTTGAAACATATCTGTAGAAGGTTGGAGGGAGAGGATAGTTGCAGTATTAATAGTCAAGACCAGCCTAAAATGGCAGCACTACCACCACCAACAACATCCCAGAATGAAACACTTGAAATGAATAATGCTGACACTATCACAATGAATGATCATGGGGAGGAAGCAATACTGTTTGGTAATGATGCTCAAATTCAAAATGAGTTTTGGAGTAATCTTTAA 657 0.3775 MGRTKVKLAFIENDAARKSTYKKRKNGVLKKVDELSTLCGIEACAIIFGPYDPQPEIWPAQVGVQKVLSKFMTVPEIEKSKKMVIQEIFLKQRIMKVKEKLNKQRRENWEKEMTMLVFQCLNAGKIVYNNIAVTDLKNLSWMMDKNLKHICRRLEGEDSCSINSQDQPKMAALPPPTTSQNETLEMNNADTITMNDHGEEAILFGNDAQIQNEFWSNL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04812 218 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi3g04812 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi3g04812 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g04812 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi3g04812 218 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi3g04812 218 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Vivi3g04812 218 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Vivi3g04812 218 PANTHER MADS BOX PROTEIN 3 151 - -
Vivi3g04812 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vivi3g04812 218 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g04812 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04812 Vivi-Chr3 90399691 90400347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04812 1 179 Type I MADS-box Gene Family AT5G48670 48.187 3.58e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04812 SRF-TF 7.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04812 - - vvo:131636391 271.552