Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04807 ATGGGTAGAAGAAAAGTGAAACTGGCTTTCATTGTGAATGATGCTGCAAGGAAAGCAGCATACAAGAATAGGAAGAAAGGTCTGTTGAAGAAGGTTGATGAGTTATGTATTCTTTGTGGAATTGAAGCTTGTGCTATAATTTGTTGCCCATATGATCCTGAGATTTGGCCAACACCATTGGGAGTCCAAAAGGTGCTCTCAAAATTCCGGACGGTGCCAGAATTTGAGAAAAGCCAGAAAACGATGAATCTAGAGATTTTCCTCAAACAAAGAGTTTCCAACGCTAAAGAAAAACTAAAGAAGCAAATGAGAGAGAATAAAGAGAAAGAGATGATGATGGTCATGTTTCAATGTCTCAATGCTGGAAATGTTGTGGACAACAATATGTCTGGGGTTGATTTGAATTCTCTTGCTTCCTTTATTGACCATAATTTGAATGACATTGGTAGAAGGTTGGAAACAGATAATATTAATAATTGGGAAATTCAGATGAATAACTTTGACAACATTGAAAGGGAATCGAATGTGGATTTCAAGCATGATAATGATGAAAATCTTGAGAATGAATTTTGGAGTAACCTACAACCTTGA 591 0.3638 MGRRKVKLAFIVNDAARKAAYKNRKKGLLKKVDELCILCGIEACAIICCPYDPEIWPTPLGVQKVLSKFRTVPEFEKSQKTMNLEIFLKQRVSNAKEKLKKQMRENKEKEMMMVMFQCLNAGNVVDNNMSGVDLNSLASFIDHNLNDIGRRLETDNINNWEIQMNNFDNIERESNVDFKHDNDENLENEFWSNLQP 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04807 196 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g04807 196 PANTHER MADS BOX PROTEIN 3 152 - -
Vivi3g04807 196 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Vivi3g04807 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vivi3g04807 196 SMART madsneu2 1 58 IPR002100 GO:0003677|GO:0046983
Vivi3g04807 196 Coils Coil 89 112 - -
Vivi3g04807 196 Gene3D - 13 117 IPR036879 GO:0003677|GO:0046983
Vivi3g04807 196 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04807 Vivi-Chr3 90374599 90375189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04807 1 153 Type I MADS-box Gene Family AT5G48670 53.548 8.72e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04807 SRF-TF 7.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04807 - - vvo:131636391 218.779