Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04802 ATGACTAGAAGAAAGGTGAAACTTGCCTTCATTGTTAATGATGCTGCTAGGAAAATCACATACAAGAAAAGGAAGAAGAGTTTATTGAAGATGGTTGATGAACTAAGTACCCTATGCGGAATTGAAGCTTGTGCTATAATTTATAGCCCTTACGATTCGCAACCTGAGATCTGGCCATCACCATGCGGAGTCCAAAATGTTCTCTCAAAATTCAGGACAATGTCTGAATTCGGGCAACGCAATAAAATGGTGAATCAAGAGACTTTCTTGAAACAAAGAGTTTTGAAGGGTAAAGAGCAACTAAACAAGCAAAGGAGAGACAATAAGGAGAAAGAGATGAGCATGCATATGTTTGAATGTCTAAATGCTGGGAAAATTGTATCAAGCAATATGTCTAAGGTTGATTTGAATAATTTGTCATGGATGATTGACATGAAATTGAAGGACATTGGTAGAAGGTTGGATACGGCACTACTACCTCCCCAAGCATCAGCATCCCCGAATGAAGATATTGAAATGAATAACGTTGATACTACGGTGAATAGTCATGGAGATGAACCAATTCTGTTTGATAATGAAGCTAATCTTGAAAATGAATTTTGGTCTAATCTACTTTGA 618 0.3722 MTRRKVKLAFIVNDAARKITYKKRKKSLLKMVDELSTLCGIEACAIIYSPYDSQPEIWPSPCGVQNVLSKFRTMSEFGQRNKMVNQETFLKQRVLKGKEQLNKQRRDNKEKEMSMHMFECLNAGKIVSSNMSKVDLNNLSWMIDMKLKDIGRRLDTALLPPQASASPNEDIEMNNVDTTVNSHGDEPILFDNEANLENEFWSNLL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04802 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi3g04802 205 PANTHER MADS BOX PROTEIN 3 143 - -
Vivi3g04802 205 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi3g04802 205 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
Vivi3g04802 205 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi3g04802 205 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Vivi3g04802 205 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g04802 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi3g04802 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi3g04802 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g04802 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04802 Vivi-Chr3 90238832 90239449 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04802 1 155 Type I MADS-box Gene Family AT5G48670 58.710 5.50e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04802 SRF-TF 4.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04802 - - vvo:131636391 355.91