Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04800 ATGGCTGCCAAAAATATTGAGGTTGACTACATTACTGACGACTCCAAGAGAAATACAACATTCAGAAAAAGGAAGCAAGGTATCATCAAGAAGATGGATGAAATTACCACCCTTTGTGGAATTGATGCATGTGGTATAATCTATGATGAAAATATGTCACAGCCAACAATTTGGCCATCAAAAGATACATTTCAAACATTGATGGACAAATTTAGAACCCTTCCTGAATCAGAACAAAGAAAAGTGACGTTGGATCACGAGGACTTCTTGAAGAACACAATAGCAAAAGATCGTGAGAAATTAATCAAACAAACAGACATCATCACCAAGAAGAATAAAATGAATAATTTACTTGATCATTTTATCCGAACAGGTGAATTTGACGGAAATGATTTGAGCGAAAGTGATCTCGAAGATTTGTCATTGCTTATTGATGACAACCTAAAAGGACTTGGGCAGATGACGAAATAA 471 0.3546 MAAKNIEVDYITDDSKRNTTFRKRKQGIIKKMDEITTLCGIDACGIIYDENMSQPTIWPSKDTFQTLMDKFRTLPESEQRKVTLDHEDFLKNTIAKDREKLIKQTDIITKKNKMNNLLDHFIRTGEFDGNDLSESDLEDLSLLIDDNLKGLGQMTK 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04800 156 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Vivi3g04800 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi3g04800 156 PANTHER MADS BOX PROTEIN 5 123 - -
Vivi3g04800 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vivi3g04800 156 CDD MADS_SRF_like 4 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g04800 156 SUPERFAMILY SRF-like 4 94 IPR036879 GO:0003677|GO:0046983
Vivi3g04800 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g04800 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi3g04800 156 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04800 Vivi-Chr3 90208083 90208864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04800 1 151 Type I MADS-box Gene Family AT3G05860 37.419 5.84e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04800 SRF-TF 7.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04800 - - vvo:131636390 216.853