Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04799 ATGGCTAGAAAGAAGGTCAAACTTGCATACATAACTTGTAACTCGAAGAGGAGGGAAACATTCAGAAAGAGGAAATCCGGTATAATGAAGAAGGTTAATGAAATCAGCACACTTTGTGGGATAGAAGCGTGTGCAATAATCTATGACAAGAACAATCCTCAACCAGAGGTTTGGCCATCAGATTCCGGAGTCAGAAATGTGTTGTTCAAGTTCAGGAGTTTGCCTGAACTTGAACGAAGCAAAAAGATGGTGGATCAAGAAGCTTTCTTAAGGCAAAGCATAGCAAAAGTCTACGAGCAGTTGAAGAAGCAAAGGGAGGAAACAAGAAAGAAGGAAATGACCAATATCATTCATCATTTCATTCAAAGTGGTGAATTCAATGAAATGAATTTAATGAGCAAACATGATCTCAATGATTTGTCTTCTTTTATTGATGAAAATATGAAGGAAATCGACGGAAAGATGAAAGGAATGCCAATTGAAGTCCAAGAGGAGGTTATGAATGGAAGAGAGATGCAAGAAAATATTGGTCATGTCCAAGGGCTGGTGAGTGGAGAAAATGGTCAACTAGCAAATATGGGTCAGTATGTCCAAGGAATTGAGACCAACATTGAAGATGATATGCATCTTAATTTCCAACAATGGCCAATGGATTTTTCTATGTTTCAATTTCCATTTGTTAACGATGGCCCAAATGGATTTTAG 705 0.3787 MARKKVKLAYITCNSKRRETFRKRKSGIMKKVNEISTLCGIEACAIIYDKNNPQPEVWPSDSGVRNVLFKFRSLPELERSKKMVDQEAFLRQSIAKVYEQLKKQREETRKKEMTNIIHHFIQSGEFNEMNLMSKHDLNDLSSFIDENMKEIDGKMKGMPIEVQEEVMNGREMQENIGHVQGLVSGENGQLANMGQYVQGIETNIEDDMHLNFQQWPMDFSMFQFPFVNDGPNGF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04799 234 Gene3D - 14 124 IPR036879 GO:0003677|GO:0046983
Vivi3g04799 234 Coils Coil 91 111 - -
Vivi3g04799 234 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Vivi3g04799 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi3g04799 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Vivi3g04799 234 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Vivi3g04799 234 PANTHER MADS BOX PROTEIN 3 153 - -
Vivi3g04799 234 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g04799 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi3g04799 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g04799 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi3g04799 234 FunFam agamous-like MADS-box protein AGL80 13 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04799 Vivi-Chr3 90115212 90116307 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04799 1 156 Type I MADS-box Gene Family AT5G48670 51.592 1.68e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04799 SRF-TF 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04799 - - psat:127078338 409.068