Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04798 ATGAGTAGAAAGAAGGTGAAGCTTCAATACATACTCAATCAGTCCAGCAGGAGGGCCACCTTCAACAAAAGGAAAACAAGTTTACAGAAGAAGGTGAACGAAATCAGCACCCTTTGTGGGATAGAAGGATGTGTCATTATCTATGGCGAAAACAGTGTTCAACCAGATGTTTGGCCACCTGGTGTAGGAACACTAAATGTGATACACAGGTACCACAGTTTATCTGAACTCGAACGAAACAAAAGGTCGGTGGATTTGGAGGGCTTCTTGAGGCAATGCATAGATAAATCCCAGGAGCAGTTGAGGAAACTAGTTTTGGAGAACAAGAAGAAGAGGTTTATGATTTTCACTGATAAAGCACTTATTAATCTACATAACGCTGTTCCTGTGAACATGAATGATCTCAATGGTATGAATGATGAAATCAATGATCTGAGGGAATTTATTGATGGCAATATCAAGGAAGTCACGAAAAAGTTGAATTCGATGGATGCTGAAGCTGAAGAGAATGCTGGTAATGGAATTGAAGCTATGACTGGAATAGAGCAGCAGGGTTTTATTGGAAATGTTGGGAATGGAGTTGGTATGCAGGCTGATGTCCATGGTTTGGATACCAACATGGGTTATAATTATTTTCCTTGGGACAACTCCATGTTAGCATATCATGATTATAATATGGACAGAGATGGTCTTTAA 696 0.398 MSRKKVKLQYILNQSSRRATFNKRKTSLQKKVNEISTLCGIEGCVIIYGENSVQPDVWPPGVGTLNVIHRYHSLSELERNKRSVDLEGFLRQCIDKSQEQLRKLVLENKKKRFMIFTDKALINLHNAVPVNMNDLNGMNDEINDLREFIDGNIKEVTKKLNSMDAEAEENAGNGIEAMTGIEQQGFIGNVGNGVGMQADVHGLDTNMGYNYFPWDNSMLAYHDYNMDRDGL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04798 231 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Vivi3g04798 231 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g04798 231 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vivi3g04798 231 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Vivi3g04798 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g04798 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi3g04798 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Vivi3g04798 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi3g04798 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04798 Vivi-Chr3 90064373 90065436 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04798 1 186 Type I MADS-box Gene Family AT3G05860 36.041 1.69e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04798 SRF-TF 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04798 - - psat:127078340 301.597