Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04795 ATGAAGAAATTTTATGAACTCAGCACCCTTTGTGGCATAGAAGCTTGTGCAATAATCTATGATGAAAACAATCCTCAACCAGAGGTTTGGCCATCTTTCTCGCAAGTAAGAAACGTGTTGTTCAGGTACATGAGTTTGCCTGATCATGAACGAAGCAAGAAGATGGTTAATTTAGAGACCTACTTGATGCAAAGCATTGAGAAAGCTCAAGATTTGTTGAGGAAACAAATGGAAGATAACCAAAAGAAGGAAATAGCCGATTTAATAGATCGGTTTATTCATACCGGTGAATATAATATGGGAAATATGAACCTGAATGATGTAACATTTTATATTGATAAGAATCTGAAGCAAATTGAGAAGAGGATGGATTCAATGGAAATCTAA 387 0.354 MKKFYELSTLCGIEACAIIYDENNPQPEVWPSFSQVRNVLFRYMSLPDHERSKKMVNLETYLMQSIEKAQDLLRKQMEDNQKKEIADLIDRFIHTGEYNMGNMNLNDVTFYIDKNLKQIEKRMDSMEI 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04795 128 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 1 24 IPR002100 GO:0003677|GO:0046983
Vivi3g04795 128 CDD MADS_SRF_like 1 57 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g04795 128 Gene3D - 1 69 IPR036879 GO:0003677|GO:0046983
Vivi3g04795 128 Coils Coil 63 86 - -
Vivi3g04795 128 SUPERFAMILY SRF-like 1 67 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04795 Vivi-Chr3 89941912 89942298 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04795 2 124 Type I MADS-box Gene Family AT1G65300 39.200 1.33e-25 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04795 SRF-TF 9.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04795 - - psat:127080461 213.001