Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04794 ATGAGAAGGAGAGTGAAACTTGCATTTATGGTCAACGATTCTGCGAGAAGGATAACTTACACTAAAAGGAAAAAGAGTCTAATCAAAAAGATTGATGAACTTGCAACTCTTTGTGGGATTGAAGCTTGTGCTATAGTTTATAGCGATTTTCATTCGGAGCCCGAGATCTGGCCTTCCCCATGCGAGGTCCAAAGGGTCGTTACAAAGTTCAGAAGTTATTCTGACTTTGAAAAAGGTAAGAAGATGCTAAACCAAGAGAGTTTTTTGATGCAGAGGATTGTGAAGTCCAAAGAACAATTGGCAAAATTGGAGAAAAATAATTGGGAGACGGAGAAGTCATTGATTTTGTTTCAATGTCTTGCTAAAGAAAATTTTATCGACACTTTGAACACAAATATTTTGAATGACCTAACATTTGATATTAATGAGAAGCTGGAGAAAATCACTTCAAAGGTGAATGAACTGGATACAAATGTAACCACTTGA 486 0.3642 MRRRVKLAFMVNDSARRITYTKRKKSLIKKIDELATLCGIEACAIVYSDFHSEPEIWPSPCEVQRVVTKFRSYSDFEKGKKMLNQESFLMQRIVKSKEQLAKLEKNNWETEKSLILFQCLAKENFIDTLNTNILNDLTFDINEKLEKITSKVNELDTNVTT 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04794 161 CDD MADS_SRF_like 1 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g04794 161 Gene3D - 12 95 IPR036879 GO:0003677|GO:0046983
Vivi3g04794 161 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Vivi3g04794 161 PANTHER MADS BOX PROTEIN 2 153 - -
Vivi3g04794 161 Coils Coil 86 113 - -
Vivi3g04794 161 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Vivi3g04794 161 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Vivi3g04794 161 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Vivi3g04794 161 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi3g04794 161 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Vivi3g04794 161 FunFam agamous-like MADS-box protein AGL80 12 96 - -
Vivi3g04794 161 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04794 Vivi-Chr3 89830352 89830837 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04794 1 152 Type I MADS-box Gene Family AT1G65300 44.737 4.69e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04794 SRF-TF 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04794 - - tpra:123904466 214.542