Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04791 ATGGCGAGGAAGAAGGTGAAGCTTGCTTACATTACCAAAGACTCAAAGAGGAGGGCAACATTCAAGAAAAGAAAAAATGGTTTAATAAAAAAGGTTGATGAAATAAGCACCCTATGTGGGATTGAAGCATGTGCTGTAATCTTTGGTGAAAACGATCCGCAGCCAGAGGTTTGGCCTTCTCCACAGGGTGTCCAAAATGTATTATCAAGGTTTAAGAGATTACCAGACTTGGAACAAACCAAAAAAATGTTTAATCATGAAAGTTTCTTGAAGCAAAGGATTGAAAAGGCACAAGAAAATCTAAACAAACAAAAGATTGACAACAAAAGGAAGGAAATGACACATCTGATGTTTCAATGCCTTGATGCTGGTCAGATATTTGAAAGTGTTAACATGAATGATCTCAATGATCTCTCATGGTTGATTGATCAAAACTTGAAACATCTCGAAAGGAGAATCAATGAGACTCCAGTCAATGAGGTTGTCGAAAATCGAATTGAAAATTTTAATGGAATGGAGCAAGGAATGGTGAACAATGTTGATGTTGACTTCAACAACAATCAGGGTGATATATTACAATTTCAAAATGATAATTATCTACCACAAGGCTTTTGA 615 0.3593 MARKKVKLAYITKDSKRRATFKKRKNGLIKKVDEISTLCGIEACAVIFGENDPQPEVWPSPQGVQNVLSRFKRLPDLEQTKKMFNHESFLKQRIEKAQENLNKQKIDNKRKEMTHLMFQCLDAGQIFESVNMNDLNDLSWLIDQNLKHLERRINETPVNEVVENRIENFNGMEQGMVNNVDVDFNNNQGDILQFQNDNYLPQGF 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04791 204 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g04791 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi3g04791 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi3g04791 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g04791 204 PANTHER MADS BOX PROTEIN 3 153 - -
Vivi3g04791 204 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Vivi3g04791 204 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi3g04791 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vivi3g04791 204 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Vivi3g04791 204 Coils Coil 87 114 - -
Vivi3g04791 204 Gene3D - 14 116 IPR036879 GO:0003677|GO:0046983
Vivi3g04791 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04791 Vivi-Chr3 89703021 89703715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04791 1 182 Type I MADS-box Gene Family AT5G48670 52.747 2.53e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04791 SRF-TF 4.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04791 - - vvo:131658510 411.764