Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04789 ATGAGAAGGAGAGTGAAACTTGCATTTATGGTCAACGATTCCGCAAGGAATATAACTTACACCAAAAGAAAAAAGAGTCTAATCAAAAAGATTGATGAACTTGCAACTCTTTGTGAAATTGAAGCTTGTGCTATAGCTTATAGCGACTTTCATCCAAAGACGGAGATTTGGCCTTCCCCGTGGGAGGTCCAAGGAGTCGTTACAAAGTTTAGAAGTTATTCTGATTTTGAGAAAGGTAACAAGATGCTGAACAAAAAGAGTTTTTTGATGCAAAGGATTGTGAAATCTAAAGAACAATTGGTGAAATTGCGGAAAAGCAATTGGGAGGTGGATAAGTCATTGATCTTATTTCAATGTCTTGTCAAAGAAAACTTTATCGACACTTTGAATACAAATACTTTGAATGACCTAACATATGATATTAATGAGAAGCTGAAGAAAGTTACTTCAAAGATAAATGAACTGGATACAAATGTAACCATCTAA 486 0.3457 MRRRVKLAFMVNDSARNITYTKRKKSLIKKIDELATLCEIEACAIAYSDFHPKTEIWPSPWEVQGVVTKFRSYSDFEKGNKMLNKKSFLMQRIVKSKEQLVKLRKSNWEVDKSLILFQCLVKENFIDTLNTNTLNDLTYDINEKLKKVTSKINELDTNVTI 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04789 161 CDD MADS_SRF_like 1 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g04789 161 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi3g04789 161 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Vivi3g04789 161 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Vivi3g04789 161 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Vivi3g04789 161 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Vivi3g04789 161 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Vivi3g04789 161 Gene3D - 12 99 IPR036879 GO:0003677|GO:0046983
Vivi3g04789 161 PANTHER MADS BOX PROTEIN 2 152 - -
Vivi3g04789 161 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04789 Vivi-Chr3 89640770 89641255 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04789 1 152 Type I MADS-box Gene Family AT1G65300 41.447 8.43e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g04789 SRF-TF 3.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04789 - - tpra:123904466 178.718