Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04787 ATGGCTCAAAAGCTTAGAATGGGAGAACAAGAATTTTCTATTGCTATGGTGATTCTATTTGTTTTGTTTATTAACATGAATATGTTAAGTGTTAGAGGTGATTATGGTGGTTGGGAGAGTGCTCATGCCACTTTCTATGGCGGCGGTGATGCTTCTGGCACAATGGGTGGAGCATGTGGATATGGAAATTTGTATAGTCAAGGATATGGAACAAACACAGCAGCATTAAGCACTGCTTTGTTCAACAATGGATTAAGCTGTGGATCTTGCTATGAAATGAGATGCAATGATGATCCAAGATGGTGCAAACCTGGTTCTATTATTGTTACTGCTACAAATTTCTGTCCACCAAATCCAGCTCAAGCTAACAACGATGGTGGTTGGTGTAATCCTCCTTTGCAACATTTTGATATGGCTGAACCTGCTTTCCTTCAAATTGCTGAATATAGAGCTGGAATTGTTCCTGTCTCCTTTAGAAGGGTGCCATGTTTGAAAAAGGGAGGAGTAAGATTCACAATAAATGGCCACTCTTACTTCAACCTAGTTTTGGTGACCAATGTGGGTGGAGCTGGTGATGTCCATTCAATTTCCATCAAAGGCTCAAGAACTTCATGGCAACCAATGTCAAGAAATTGGGGCCAAAATTGGCAGAGCAACTCTTACCTTAATGGACAAAGCCTCTCATTTCAAGTCACCACAAGTGATGGTAGAACAATGACAAGCTATAATGTGGCACCAGCAAATTGGCAGTTTGGTCAAACCTTTCAAGGAGCTCAATTTTAG 783 0.4087 MAQKLRMGEQEFSIAMVILFVLFINMNMLSVRGDYGGWESAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCNDDPRWCKPGSIIVTATNFCPPNPAQANNDGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVSFRRVPCLKKGGVRFTINGHSYFNLVLVTNVGGAGDVHSISIKGSRTSWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTMTSYNVAPANWQFGQTFQGAQF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04787 260 SMART dpbb_1 73 158 IPR007112 -
Vivi3g04787 260 CDD DPBB_EXPA_N 37 163 - -
Vivi3g04787 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 257 IPR007117 -
Vivi3g04787 260 Pfam Lytic transglycolase 73 158 IPR009009 -
Vivi3g04787 260 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Vivi3g04787 260 SUPERFAMILY Barwin-like endoglucanases 17 186 IPR036908 -
Vivi3g04787 260 PANTHER EXPANSIN-A15 17 260 IPR002963 GO:0009664
Vivi3g04787 260 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Vivi3g04787 260 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Vivi3g04787 260 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Vivi3g04787 260 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Vivi3g04787 260 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Vivi3g04787 260 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Vivi3g04787 260 Gene3D - 24 163 IPR036908 -
Vivi3g04787 260 PRINTS Expansin signature 126 143 IPR002963 GO:0009664
Vivi3g04787 260 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Vivi3g04787 260 PRINTS Expansin signature 95 106 IPR002963 GO:0009664
Vivi3g04787 260 PRINTS Expansin signature 68 82 IPR002963 GO:0009664
Vivi3g04787 260 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Vivi3g04787 260 PRINTS Expansin signature 143 156 IPR002963 GO:0009664
Vivi3g04787 260 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Vivi3g04787 260 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Vivi3g04787 260 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Vivi3g04787 260 FunFam Expansin 28 164 - -
Vivi3g04787 260 FunFam Expansin 168 260 - -
Vivi3g04787 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 168 IPR007112 -
Vivi3g04787 260 SUPERFAMILY PHL pollen allergen 165 257 IPR036749 -
Vivi3g04787 260 Gene3D - 168 260 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04787 Vivi-Chr3 89535612 89537524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04787 11 260 Expansin Gene Family AT2G40610 78.088 1.30e-148 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04787 - K20628 gmx:100499976 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04787 3 89535612 89537524 Vivi3g04787 3 89535612 89537524 ECH
Vivi3g04787 3 89535612 89537524 Vivi1g05269 1 115318260 115319373 ECH
Vivi3g04787 3 89535612 89537524 Vivi7g01650 7 74116946 74119169 ECH
Vivi3g04787 3 89535612 89537524 Vivi7g01650 7 74116946 74119169 PCT