LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g04778	ATGACGAGTTTTCTGATTGATTACACGAAGCAAAATGTAGAGAAATTGTTAAATGAAGCGCTGAAAGAATTACGTTATATATGTTGCTTCACTTGCATTGCTAATGATTTTGAAGAAGAAAAAGTCTGGTTGGAAGCAGAAAGGACATCTGTTGGGCAGCGTGTTAAGGTTGCAAAAAGAAGAGGAGAAGATGTTCAAGCTAATGCTCTTTTTTGGGAAGAAGAAGCTGATAAGCTCATTCGAGAAGACACCAAAACAAAACAAAAATGTTTTTTTGGATTATGTCCTCATTGCTTATGGCGATACAAAAGGGGAAAGGAACTGGAAAATAAGAAAGACCAAATAAAAAAGTTTATGGAAACTGGAAAGGAACTTGCAATCGGCCTCCCTGCTACTCTTCCAGATGTTGAACGTTATTCATCCCGACACTATATCTCTTTTAAAAGTAGAGAATCCAAATATAAAGAGCTTCTGGATGCACTGGAAGACGACACCAATTATATAATCGGGTTGCAAGGGATGGGGGGTACAGGAAAAACTACATTGGCCAAAGAAGTGGGTAAGAAACTTAAGCAATCCAAACAATTTACGTGCATTATTGATACAACAGTATCATTTTCTCCTGATATTAAAAAGATTCAAGATGATATTGCTGGACCCTTGGGAATGAAATTTGATGACTGTAGTGAATCAGATAGACCCAAAAAACTATGGAAAAGATTAACTAATGGTGAAAAGATTCTTCTAATATTGGATGATGTTTGGGGAGATATTGATTTTGAAGAAATAGGGATTCCATATAGTGACAATCACAAAGGTTGTCGAGTTCTTGTAACCACGCGCAATGTGTTGGTATGCAACAGATTAGGATGCAGTAAGACAATCAGATTGGAGCTCTTATCTGAAGAAGATGCGTGGGAAATGTTCAAACATCATGCTGGTCTTACTGAAATTTCAACTCAAAGTTTGCTCGACAAGGGTCGTAAAATTGCAAATGAGTGCAAAAGATTACCAATTGCAATAGCGGCGATCGCTAGTAGTTTGAAAGGAAAACAACATCGGGAAGAATGGGACATGGCCTTAAAATCCTTGCAAAAACATGTGTCAATGCACGATGATGTTGTTGATGATGATGATTTGTTTAAAATATATGAGTGCTTGAAATTTAGCTATGATAATATGAATGATGGAAAGGCCAAAAGACTATTCCTTTTGTGTTCTGTATTTCGAGAAGATGAAGAAATTTCTATTGAAAGATTAATAAGACTGGGCATAGGAGCTGGCCTTTTTGGGGAAAATTATGGCAACTACGAAGATGCTCGAAGTCAAGTAGTTATATCCAAAAATAAACTCATAGATTCTTGTTTATTGTTGGAGGTAGATCAAAAGAGAGTGAAAATGCATGACTTGGTTCGTGATGCAGCCCAAAGGATTGCGATTAAAGAGATCCAAACAATAAAGTTGTATGATAAAAATCAAAAGGCAATGGTTGAAAGGGAGAAGAATGTTAAATATTTGTTATGGGAAGGAAAACTAAAGAGCGTGCTTTCATGCAAGCTTGATAGTTCAAAGCTCCAAATTCTAATTGTTATCATGTATAAGGACGGTGATTTCCATAAAGAGAAAACCGAAGTCCCAGACTCATTTTTTGAAAATATTAGCGGTCTTCGATGTTTTCACTTATGTAGTGATTTTTATGGAGCAACTCTATCATTACCTCCATCAATTCAATCTTTGAAGAATATTCGATCTCTTCTTTTTAAGTGTGTTGATTTGGGTGATATCTCTATTTTCGGAAGTCTGCAAAGTCTTGAGACACTTGATTTGGATAATTGTAAAATCAATGAATTTCCAAATGAACTTGCAAAACTACACAATCTTAGATTGTTGTACTTGAAAAGTTGTGATATTATAAGGAATAATCCATTTGAAGTGATTGAAGAATGCTCCTCACTCGAAGAGTTGTATTTCATACACAGTTTTAATGATTGTTGCCAAGAAATAACCTTTCCAATGCTACAAAGATTTATAGTGGATGATGATTGGAGGTTTGTGGATGATTCACTATCAAAATGCTTGTCTATTTTACATCAAGAAAATAGAAATTTATTGTCTGAAAAAAAACTCAAGGATTGTATGCAAGCAGTAGAGGTTCTTAGACTAAGAAAACTTCGGTGGGGATGGATAAATATCATACCTGAGATTGTTTCTATGGATAATGGTATGAATGATCTCGTCGAGCTTAGATTGAGTTACATTTCACAACTTAAGTGTCTCATTGACACTAAGCGTGGAAATTCTCAAGCAACATCTGTCTTCTCCAAGTTGGTTGTATTACAATTGGAAGAAATGGAAAGTTTGGAAGAATTGTGCAATGGTCCTCTTTCTTTTGATTCATTCAAGAATTTAGAGAAGCTGACCATCAAGTATTGCAATCAGTTGCGAAGCTTATTTATGTGCAACTTAAATCTCTGCAATCTAAAGAGCTTGTTATTGATAGGATGTCCGATGTTGTTCTCTCTATTTCAACTTACTACTTCTCGTAGCCTAGTGTCATTGGAGGAATTGAAAATACTTTGGTGCAGGCATCTTGAATACATAATAACAGACGAAAGAAAAGAGAAAGAATCGAGAGGAGAAATAGTTGCTGATGATGAAAATGATAGCAAGAGGAGTCACAAATCAATGTTTCCAAAACTTAAAGATCTTAAAATTGATATGTGTTGTGGGTTAGAATTTATACTTCCATTTCTATCTATTCAGGATCTTCCGTCACTTGAATCTTTTACAATAAGTTATTGTGAGAAGCTGCAATACATATTTGGCCAATATGTACAACTTGGTTCTCTAAAACAAATGATTCTTCATTCTTTGCCCAATTTAATAAATATTTTTCCAAAATGTCATCTTACCACATCTTCTTCCATTTCTAGAGATGCCTCCAAGCCAGAAAAACAATCAGAACCTATGAAACGCACTGTCTTTTTATGGAGAGATATATGTTGCTTTGGTAAAAAAAACTGGCACAAATCCACGAGTTCTACGAGTACTGAAACCCCATTGGTTTCTGAAGATAAACAGCCGGATTGCTTAATAGCTTCGGAATCCGATTCCAATTCCTTCAAGATATGGGAACGTGTTCAATGTCTTTTGACACAATCACTCTTCATGTGGAATATTAAAGAGATTGAATTAGTTAATATTTCAAAGATAGAATCAATATTTATCCTATCTATTGCTCCAAGAATATTGTTGGAAACTTTGACAATTAGGTACTGTAATAATTTGAAGCACATAATAATAGACACCGGAGATTATGAAAGTGGTGGCAACAACTGGCACAATATCTTCCCAAAATTAAAAGAGGTCAGGGTCGAAGGTTGCATGAAGTTAAAATACATATTTGGACATTACTCGGAGGCTCATCAAAACCATAATGAGATTCACCTTTATCTTCCAGCTTTGGAACGTCTCGTTCTTAGGAATCTGCCAAAGTTAGTCACCACGTGTTCCAAACATTATCGCACAACATATCCACTTTTGGAATATCTTGTAGTTGAGAAGTGCTCACAGTTTGCTATCAAATCTATTGGCGATCTCACAATTCCTTTGGTTTCAAAATCTCTCGACACTACAATCAAGAAGGAATTGAATGGGAACATGGATCATTTTCTTGCTTTAAAAAGTCTCAGGGTGTATGATTGCAAAGTAGAAAATATATATTTTCTGAATGAAGTACATGAACAACAAATGAACTTAGGTTTGCAGTACATTGAGTTGCATGATCTTCCTACGACAACTTGTTTGTTGGTTGGTCCCAAAAATTCATTTTCCCTCAATCACCTTACACGGATAAAAATCTTCCGATGCGAAAAATTGGAAATTGTGTTTTCCACTTCTCTATTAAGATGCCTACCACAATTTCTTTTTCTGAGAATACAAGAATGCAAAGAGTTGAAGCATATTATTAAAGATGATTTGAAGAATGAAAATTCCACAAATTTTCAGTCTACAAACACATACTTCCCAAAGCTAGAAATACTTTGTGTGGTAAACTGCAACAAGCTCAAATACGTCTTTCAGACTTCCGTATGCAAAGTGCTTCCAAATCTAAAGGCTCTGATGATAAGAGAATCATATGAGCTAGAAGAAATATTCAAAAGTGAAGGTGATGATCAAAATCTTGAGATTCCAAATCTGAATGTTGTAGCATTCATCAATCTGCCAAACCTCTGCAAAGATCAGGAAGTGCATTTTGAGGGTGTAAATTATCGTCTTGTACGTAATTGTCATAAACTCTCTCTGACTTCAGCGTCAAAATCCGACCGGATTGGTAACATTATTTATTTTGTTGACAAAATAGATACTGAAATCTTTATGGAATTGTCGATTCTATTGCAACCATTAAAAGAAGTGTACAAAAGCCAGTACACCTGTAATGAAAATACAAGTTCAGAAATCACTCAAGAATTTGCAGCTGGGGTTGAAGCGGAAACAACACCAGGACAGATATTGACTTCTTCACAGGTGTTGATGAATGAACAATCAATGGATCAACAACTTTTGATGAACCAACAACACTCACTTCGAGAAACTGATGATACTACCATCAAACCACAGTTGGCTGGTTCTACTACACAAGAAAAATATTTAGCAGCAAATTCGTCTTCCATTTCAGAAACAAAGAATGAGCCACCTATACAATTAGTTGCTCCTAAACAAAAGGGTATTGAAATAAGTGATGAAGAAGGAATTACATCAACTAATGTTGAGACTTTAACATCCTCAACTCATTCAAAATCAGACAGTTCATCATCACCTCATTTGGAATTAGTCAGTTCGTCATCAGATCCATTAATTACTTCTGAGTTTAAACCATCTTCAGAGTCTTTGCAGAAAGATGGTGATTGCCAAATAGCCACAACCTCTTTGCCCATTGCCACTTCGGAGAAATTTTTTGAAGGTGAAGTGTCTTTGAATATATTTCCAGAGAGCAATGATGAAGGTGAATACTCTTTTATTATACTTTCAGATACCAATGATGAAGTTTCTCTAAATGATGATGCTTTCATAAAAGTAATAAGCTCAAATGTTAAGGAAGAGAATCCTAAGGAGGGTGACATAGGAGTTTCCAAATCTAATCCCTCTTCTAGCATCATATCCACTATTGCATCTCAGTTTCCTTCAATTTCTTCCAAAGAAGAACCTTCTCAAATGGATGAAGATTTAAGTTCAACTTTGGCTGTCACAAGGGAGCTCGAGCAACTAGCTTCCAAGCAGCATTTGAATCACGAGAACTTATATTTGTTGAATGATTTCCTTGCCAAGCATCCTTCTCTTTGTCTAAGAGATAATTCGCTTAGTAATAGATACAAGGGCTATGCCTACAACTTACTAGCTGAGCTATTGAAATTCCTCCAAACGCACAGTGTGCTTGATGTATTGGGCTCACGCCGGTCTGAACTTGTTGAGTTATTACAAGATGTGCGCAGCTTTGCTTTTGATAAAGATTGGTTAGATGGTGTCGAAAGGCGTATTATTCATCAAGAGGCGGTTTTAAATGCCCCTATTGGCTATTAG	5580	0.3573	MTSFLIDYTKQNVEKLLNEALKELRYICCFTCIANDFEEEKVWLEAERTSVGQRVKVAKRRGEDVQANALFWEEEADKLIREDTKTKQKCFFGLCPHCLWRYKRGKELENKKDQIKKFMETGKELAIGLPATLPDVERYSSRHYISFKSRESKYKELLDALEDDTNYIIGLQGMGGTGKTTLAKEVGKKLKQSKQFTCIIDTTVSFSPDIKKIQDDIAGPLGMKFDDCSESDRPKKLWKRLTNGEKILLILDDVWGDIDFEEIGIPYSDNHKGCRVLVTTRNVLVCNRLGCSKTIRLELLSEEDAWEMFKHHAGLTEISTQSLLDKGRKIANECKRLPIAIAAIASSLKGKQHREEWDMALKSLQKHVSMHDDVVDDDDLFKIYECLKFSYDNMNDGKAKRLFLLCSVFREDEEISIERLIRLGIGAGLFGENYGNYEDARSQVVISKNKLIDSCLLLEVDQKRVKMHDLVRDAAQRIAIKEIQTIKLYDKNQKAMVEREKNVKYLLWEGKLKSVLSCKLDSSKLQILIVIMYKDGDFHKEKTEVPDSFFENISGLRCFHLCSDFYGATLSLPPSIQSLKNIRSLLFKCVDLGDISIFGSLQSLETLDLDNCKINEFPNELAKLHNLRLLYLKSCDIIRNNPFEVIEECSSLEELYFIHSFNDCCQEITFPMLQRFIVDDDWRFVDDSLSKCLSILHQENRNLLSEKKLKDCMQAVEVLRLRKLRWGWINIIPEIVSMDNGMNDLVELRLSYISQLKCLIDTKRGNSQATSVFSKLVVLQLEEMESLEELCNGPLSFDSFKNLEKLTIKYCNQLRSLFMCNLNLCNLKSLLLIGCPMLFSLFQLTTSRSLVSLEELKILWCRHLEYIITDERKEKESRGEIVADDENDSKRSHKSMFPKLKDLKIDMCCGLEFILPFLSIQDLPSLESFTISYCEKLQYIFGQYVQLGSLKQMILHSLPNLINIFPKCHLTTSSSISRDASKPEKQSEPMKRTVFLWRDICCFGKKNWHKSTSSTSTETPLVSEDKQPDCLIASESDSNSFKIWERVQCLLTQSLFMWNIKEIELVNISKIESIFILSIAPRILLETLTIRYCNNLKHIIIDTGDYESGGNNWHNIFPKLKEVRVEGCMKLKYIFGHYSEAHQNHNEIHLYLPALERLVLRNLPKLVTTCSKHYRTTYPLLEYLVVEKCSQFAIKSIGDLTIPLVSKSLDTTIKKELNGNMDHFLALKSLRVYDCKVENIYFLNEVHEQQMNLGLQYIELHDLPTTTCLLVGPKNSFSLNHLTRIKIFRCEKLEIVFSTSLLRCLPQFLFLRIQECKELKHIIKDDLKNENSTNFQSTNTYFPKLEILCVVNCNKLKYVFQTSVCKVLPNLKALMIRESYELEEIFKSEGDDQNLEIPNLNVVAFINLPNLCKDQEVHFEGVNYRLVRNCHKLSLTSASKSDRIGNIIYFVDKIDTEIFMELSILLQPLKEVYKSQYTCNENTSSEITQEFAAGVEAETTPGQILTSSQVLMNEQSMDQQLLMNQQHSLRETDDTTIKPQLAGSTTQEKYLAANSSSISETKNEPPIQLVAPKQKGIEISDEEGITSTNVETLTSSTHSKSDSSSSPHLELVSSSSDPLITSEFKPSSESLQKDGDCQIATTSLPIATSEKFFEGEVSLNIFPESNDEGEYSFIILSDTNDEVSLNDDAFIKVISSNVKEENPKEGDIGVSKSNPSSSIISTIASQFPSISSKEEPSQMDEDLSSTLAVTRELEQLASKQHLNHENLYLLNDFLAKHPSLCLRDNSLSNRYKGYAYNLLAELLKFLQTHSVLDVLGSRRSELVELLQDVRSFAFDKDWLDGVERRIIHQEAVLNAPIGY	1859

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g04778	1859	Pfam	NB-ARC domain	155	393	IPR002182	GO:0043531
	Vivi3g04778	1859	Gene3D	Ribonuclease Inhibitor	522	680	IPR032675	-
	Vivi3g04778	1859	MobiDBLite	consensus disorder prediction	1535	1564	-	-
	Vivi3g04778	1859	Gene3D	-	133	295	IPR027417	-
	Vivi3g04778	1859	PRINTS	Disease resistance protein signature	599	615	-	-
	Vivi3g04778	1859	PRINTS	Disease resistance protein signature	241	255	-	-
	Vivi3g04778	1859	PRINTS	Disease resistance protein signature	168	183	-	-
	Vivi3g04778	1859	PRINTS	Disease resistance protein signature	334	348	-	-
	Vivi3g04778	1859	FunFam	Probable disease resistance protein At1g61300	134	294	-	-
	Vivi3g04778	1859	SUPERFAMILY	RNI-like	1223	1384	-	-
	Vivi3g04778	1859	MobiDBLite	consensus disorder prediction	1581	1635	-	-
	Vivi3g04778	1859	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	145	406	IPR027417	-
	Vivi3g04778	1859	Gene3D	-	390	478	IPR036388	-
	Vivi3g04778	1859	MobiDBLite	consensus disorder prediction	1535	1635	-	-
	Vivi3g04778	1859	Gene3D	Ribonuclease Inhibitor	683	984	IPR032675	-
	Vivi3g04778	1859	SUPERFAMILY	L domain-like	466	969	-	-
	Vivi3g04778	1859	Gene3D	Ribonuclease Inhibitor	1178	1397	IPR032675	-
	Vivi3g04778	1859	PANTHER	NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED	1115	1395	-	-
	Vivi3g04778	1859	Gene3D	-	300	389	IPR042197	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g04778	Vivi-Chr3	89450408	89459950	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g04778	169	642	WRKY Transcription Factor Family	AT5G45050	22.368	4.87e-14	76.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g04778	-		-	vvo:131662148	3627.8