Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04765 ATGCATTATATGGTTTCTGATTTGCTTGTGTTTTCAGCCACAGATGATGTAATAGCTTTCAAAGAGGCTGTTGAAAATGACAATCATGATGTCGACGAAGTAGGGTTGTGGTATGGGAGGAGGATTGGCTCAAAGGAAATGGGATATGAAGAGAGAACACCACTTATGATTGCTTCTTTATTTGGAAGCAAGGGTGTACTGTCATATATTCTTGAAACCGGACGTGTTGATGTTAACCAAAAGTGCGGCTCGGATAGGGCTACTGCTCTTCATTGTGCGGTTTCTGGTTGTTCTGCTGCTTCTGCTGAGGTTATCAAGCTTTTGCTTGATGCATCTGCAGATGTTAATTCTGTTGATGCGAACGGTAACCGGTGCATTGACTTGATTCTCATGATGTCTAGTAGTATCTCAGGTTCAAAGAAGAGGTTACTACTAGCCATACTAGATGAATTTAGGATGTGGGATGATATTGATGAATACAATGATTTCCTTAAGGAAGTAGGTTTCCAAATGGAGAAGCAGCAACAAGATAATGGTACACCTCGAATTGAGAAGAAAGATTATCCGATTGATCTACCCCTACCCGACATAAACAATGGGATATATAGTACAGATGAATTTAGGATGTATATATTCAAAGTGAAGACTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGTCCCTTTGTTCATCCAGGGGAAAACGCAAGGCGCCGTGATCCAATGATATATCAATACACCTGTGTCCCTTGTCCTGAGTTTCGGAAGGGATCATGCAGTAAAGAGGATGCTTGTGAATATGCACATGGTATTTTTGAGTGCTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGTAAAGATGAGACTGAATGCACCCGAAGAGTCTGCTTTTTCGCGCACAAACCGGAGGAGCTTCGCCCATTGTATGCTTCTACTGGTTCTGCTTTGCCTTCACCTATATCCTATTCCAATTCACCAAGTGCTTCTTCAATGGATTATTTCTCATTGAGCTCTCCGTGCAGTTCGACAAAATCCATGTCGACACCGCCTTTGACTCCAACTGCACCGACTTCTCCTGCCGGTGGCACGATGTGGCCAACTCAATCTTATGCTGCAGTTCCTACTCTTCAGATGCCGAGAAGCAGATTGAAAACTGGATTGAATGCTAGAGATGAAACTGAATTTCTCGAACTTGAAAATCGCCTTTTGCAGAAGCTAATGATTGAAGAGATGACAGGTCTTTCATTCCCTTCAAATAGACTAGCAGGTGTGAATCCTGCTAACTTTGATGACATTGTCGGTTCTCAGATACAATCTCCAACATCAACTCAGGTGCATCCGAATGTTACTCAGCAACTTTGGAGTTTTTCTTCTGATCTTACCACTTCAAATGTGATTGGATCACCACAGATCAACGTTGATCCGTTTATGAATTCAAAAAATGATGCCCTGTCGAAGCGGAGCCAGAGCTTTATTGAGCGCAGCAGCATGGTCAGCTTTAGTACAGAACTTCCCCCTGCTACCTCGGTTGCTATGGAGCCATATACTAACTTGTCTGGTTGGGGCTCCCCTGATGGAAAATTAGACTGGTCCATCCGCGGTGATGAACTGAATAAGATGAAAAAGTCGTATTCTTTCAGCTTTCGAGACCAACTAAGCAATTCAACAATGGTTGCGCAAAATGATGATGATCAAGATGTATTATTAAGGCAGGAATCATGGGTTAATTCACTTGTGAAGGATTCCCCAATAGTGCAATTGGAACAATATTGTGTTGAAGAGTAA 1791 0.4238 MHYMVSDLLVFSATDDVIAFKEAVENDNHDVDEVGLWYGRRIGSKEMGYEERTPLMIASLFGSKGVLSYILETGRVDVNQKCGSDRATALHCAVSGCSAASAEVIKLLLDASADVNSVDANGNRCIDLILMMSSSISGSKKRLLLAILDEFRMWDDIDEYNDFLKEVGFQMEKQQQDNGTPRIEKKDYPIDLPLPDINNGIYSTDEFRMYIFKVKTCSRAYSHDWTECPFVHPGENARRRDPMIYQYTCVPCPEFRKGSCSKEDACEYAHGIFECWLHPAQYRTRLCKDETECTRRVCFFAHKPEELRPLYASTGSALPSPISYSNSPSASSMDYFSLSSPCSSTKSMSTPPLTPTAPTSPAGGTMWPTQSYAAVPTLQMPRSRLKTGLNARDETEFLELENRLLQKLMIEEMTGLSFPSNRLAGVNPANFDDIVGSQIQSPTSTQVHPNVTQQLWSFSSDLTTSNVIGSPQINVDPFMNSKNDALSKRSQSFIERSSMVSFSTELPPATSVAMEPYTNLSGWGSPDGKLDWSIRGDELNKMKKSYSFSFRDQLSNSTMVAQNDDDQDVLLRQESWVNSLVKDSPIVQLEQYCVEE 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04765 596 Gene3D - 6 143 IPR036770 -
Vivi3g04765 596 ProSiteProfiles Ankyrin repeat profile. 85 120 IPR002110 GO:0005515
Vivi3g04765 596 MobiDBLite consensus disorder prediction 344 366 - -
Vivi3g04765 596 SMART c3hfinal6 281 304 IPR000571 GO:0046872
Vivi3g04765 596 SMART c3hfinal6 246 272 IPR000571 GO:0046872
Vivi3g04765 596 Gene3D - 246 309 - -
Vivi3g04765 596 SMART ANK_2a 50 80 IPR002110 GO:0005515
Vivi3g04765 596 SMART ANK_2a 85 117 IPR002110 GO:0005515
Vivi3g04765 596 PANTHER UNKEMPT FAMILY MEMBER 11 584 IPR045234 -
Vivi3g04765 596 FunFam Zinc finger CCCH domain-containing protein 66 204 272 - -
Vivi3g04765 596 SUPERFAMILY Ankyrin repeat 15 127 IPR036770 -
Vivi3g04765 596 ProSiteProfiles Zinc finger C3H1-type profile. 246 273 IPR000571 GO:0046872
Vivi3g04765 596 Pfam Ankyrin repeats (3 copies) 43 119 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04765 Vivi-Chr3 89124489 89126366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04765 3 584 C2H2 Transcription Factor Family AT5G12850 40.184 5.14e-133 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi3g04765 Ank_2 3.7e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04765 - - psat:127084564 867.455