Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04742 ATGAGAGAAGCTTCGAGATTCACAACGTTCTTCTGCATGCTGTTAATTATTGGGGCGGTAGTTTCTATCCCTTTGACTCTGAACAGCCAAGGGTTGGAACTTCAAAAGATGAGGGAATTATTGAAATGGAATGGTGAAGAAAGAGCCATGGATCCATGCTTGCACATTGGCCAACAAAGGCATATACATACACCATTCAGTAGGAAACTTACACAAACATCAAATTCTGCTAACTCACACAAAACCAATATTGATGATCATAAAAACACTCCTTCACCATCATCATCATCACCTTCATCACCACTTTCTTCACCTATTTCCCCATCATCTTCACTACTTTCTATATCAGAAACTCCCTCAATTTCACCATCACCAGAACTTTCACCTTCACCATCACCTGAGGCAGCACCAACAACTTCATACTTACCATTTATATCATCAAATCCACCAATAGTTATGTCCTCACCCCGACTTTCTAATTGGATTTCGGCACCTTCCCCTTTTTCATCTTCAAACGAAAGCAACTCAAAAAGTTCAAACCATAAGCAACAGTCTGTTATTATATGGTCAACAGTTGGAGGATTTTCCTTCCTTGTTTTGGTTTCATGCACTGTTTTCATTTGCTTCAGAAGTAGTAAGGTAGTAACTGTCAAACCGTGGACCACAGGGTTGAGTGGCCAGCTTCGAAAAGCGTTCATAACAGGTATTCCGAGTCTCAAGCGAGCCGAACTCGTGGTAGCTTGTGAAGATTTCAGCAACATTATTGGTTCATTTGAAGACGAGACTATCTATAAAGGAACTCTATCAAGTGGAGTTGAGATAGCTGTAGTATCTTCTGCATTGGCTTCTTCTAAAGAATGGTCGAAAAATTTGCAAGCTCAGTTCAGAAACAAGATTGAGACGTTATCGAGAGTGAACCACAAGAATTTCGTGAATCTTATTGGCTATTGTGAAGAGAATAAACCATTCACAAGGATGATGGTTTTTGAGTATGCTCCGAACGGAACACTGTTTGAGCATTTACATATTAGAGAAGCAGAACAGCTCGACTGGCGAATGAGAATGAGGATAGCTATGGGAATATCTTACTGTCTAGACCATATACATGAACTCACACCACCAGTTGCGCACAAAAGCTTGTTATCTTCCTCTATATATCTAACCGAAGATTATGCTGCTAAAATATCAGACCTTAGTTTCTGCACCGAGGAAGTTGATACAAAGGAGGGTTCGGAGAAAACATCATCAGAAGAAATAAAGGACAATGTTTATAGTTTTGGCGTAATATTGTTTGAACTGATAACAGGAAAAATTCAATATGCGGGAGAAAACGGCCTTGCGACAGATTGGGCTGCTGAGTATATAAGAGGACAACCTTTGAGAGAGTTGGTGGATACAAACTTGAAATCTTTGAAAGCTGATGAAATTGAGAAATGGTCTGAAGTGATTAACAATTGTGTAGATCCTGATCCGGAGAAAAGGCCATTGATGAAAGAGGTTACATCTATGTTAAAGGAAATCACTTCTATGGAGCCTGATGGAGCAACTCCGAAATCATCTCCTCTTTGGTGGGCCGAAATTGAAATCATGACCTCAGATTTATGTTGA 1608 0.3986 MREASRFTTFFCMLLIIGAVVSIPLTLNSQGLELQKMRELLKWNGEERAMDPCLHIGQQRHIHTPFSRKLTQTSNSANSHKTNIDDHKNTPSPSSSSPSSPLSSPISPSSSLLSISETPSISPSPELSPSPSPEAAPTTSYLPFISSNPPIVMSSPRLSNWISAPSPFSSSNESNSKSSNHKQQSVIIWSTVGGFSFLVLVSCTVFICFRSSKVVTVKPWTTGLSGQLRKAFITGIPSLKRAELVVACEDFSNIIGSFEDETIYKGTLSSGVEIAVVSSALASSKEWSKNLQAQFRNKIETLSRVNHKNFVNLIGYCEENKPFTRMMVFEYAPNGTLFEHLHIREAEQLDWRMRMRIAMGISYCLDHIHELTPPVAHKSLLSSSIYLTEDYAAKISDLSFCTEEVDTKEGSEKTSSEEIKDNVYSFGVILFELITGKIQYAGENGLATDWAAEYIRGQPLRELVDTNLKSLKADEIEKWSEVINNCVDPDPEKRPLMKEVTSMLKEITSMEPDGATPKSSPLWWAEIEIMTSDLC 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04742 535 MobiDBLite consensus disorder prediction 65 80 - -
Vivi3g04742 535 Gene3D Phosphorylase Kinase; domain 1 226 331 - -
Vivi3g04742 535 FunFam Inactive receptor-like serine/threonine-protein kinase 223 331 - -
Vivi3g04742 535 ProSiteProfiles Protein kinase domain profile. 249 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04742 535 Pfam Protein tyrosine and serine/threonine kinase 255 504 IPR001245 GO:0004672|GO:0006468
Vivi3g04742 535 SUPERFAMILY Protein kinase-like (PK-like) 235 504 IPR011009 -
Vivi3g04742 535 PANTHER PROTEIN MALE DISCOVERER 2 68 531 - -
Vivi3g04742 535 MobiDBLite consensus disorder prediction 65 135 - -
Vivi3g04742 535 MobiDBLite consensus disorder prediction 88 123 - -
Vivi3g04742 535 Gene3D Transferase(Phosphotransferase) domain 1 332 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04742 Vivi-Chr3 88372734 88381606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04742 231 511 Receptor kinase-like Gene Family AT1G67720 33.333 1.35e-35 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vivi3g04742 PK_Tyr_Ser-Thr 8.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04742 - - gmx:100814122 587.03