Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04727 ATGGGTTCAGGTTCTTCACCTTGTGCTTGTTGCAAATTATTGAGAAGGCGCTGCACACAAGAATGCATCTTTGCTCCTTATTTTCCTTCCGACGATCCACGCAGGTTCGCCATGGTTCATAAGGTCTTCGGCGCTAGCAATGTCACCAAAATGCTCCAGGAGCTTCCAATTAATCAAAGAGCAGAAGCAGTGAACAGTTTAGTTTACGAAGCAAATGCAAGAGTTAGAGATCCTGTTTATGGATGTGTTGGAGCCATATCATATCTTCAAACACAAGTTTCACAATTACAAATGCAACTTGCAATGGCTCAAACTGAGATTCTCTGCATTCAGATGCAGCAAGACTCTACAGCCACGGTTACCAATACATTACCAACATATGTTGACCATGATGACAGATTGATGCTCCTATCTGAAAATAGTAACCGCTATGGAGTTCTTCCACACTATATTAACTTTCCCTCTTCTTCTTCTTCCTCATCTAATGTATTCCAAGACTTTGAGCCTCTTAAGAGAGAGACTTTTGGGCTTGAATTTGACAGCTAA 546 0.4139 MGSGSSPCACCKLLRRRCTQECIFAPYFPSDDPRRFAMVHKVFGASNVTKMLQELPINQRAEAVNSLVYEANARVRDPVYGCVGAISYLQTQVSQLQMQLAMAQTEILCIQMQQDSTATVTNTLPTYVDHDDRLMLLSENSNRYGVLPHYINFPSSSSSSSNVFQDFEPLKRETFGLEFDS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04727 181 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Vivi3g04727 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 120 - -
Vivi3g04727 181 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04727 Vivi-Chr3 87773417 87774098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04727 2 137 AS2 family AT2G30130 73.529 2.23e-71 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi3g04727 LOB 9.8e-42 No_clan