Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04700 ATGGGATCAGGTTCATCACCTTGTGCTTGTTGCAAATTGTTGAGAAGGCGTTGCACACAAGAATGTATCTTTGCTCCTTATTTTCCTTCCGACGATCCACGCAGGTTCGCCATGGTTCATAAGGTCTTCGGTGCTAGCAATGTCACCAAAATGCTCCAGGAGCTTCCAATTAATCAAAGAGCAGAAGCAGTGAACAGTTTAGTTTACGAAGCAAATGCAAGAGTTAGAGATCCTGTTTATGGATGTGTTGGAGCCATATCATATCTTCAAACTCAAGTTTCACAATTACAAATGCAACTTGCAATGGCTCAAACTGAGATTCTATGCATTCAGATGCAGCAAGACTCTACTGCTACGGTTTCCAACACATTACCAACATATGTTGACCAAGATGACAGATTGATGCTCCTATCTGAAAATAGTAACTGCTATGGAGTTCTTCCACACTATATTAACTTTCCCTCTTCTTCTTCTTCCTCATCTAATGTATACCAAGACTTTGAGCCTCTTAAGAGAGAGACTTTTGGGCTTGAATTTGACAGCTAA 546 0.4066 MGSGSSPCACCKLLRRRCTQECIFAPYFPSDDPRRFAMVHKVFGASNVTKMLQELPINQRAEAVNSLVYEANARVRDPVYGCVGAISYLQTQVSQLQMQLAMAQTEILCIQMQQDSTATVSNTLPTYVDQDDRLMLLSENSNCYGVLPHYINFPSSSSSSSNVYQDFEPLKRETFGLEFDS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04700 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 121 - -
Vivi3g04700 181 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Vivi3g04700 181 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04700 Vivi-Chr3 87313986 87314727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04700 2 137 AS2 family AT2G30130 74.265 3.47e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi3g04700 LOB 9.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04700 - - gmx:100780073 254.603