Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04671 ATGGATGAGATTTCGTCTTCCACAAATGTCACGCAAGATGTTGGTTCTTACTCCGATGAAAATAAAGAATCATGGCAACATTTTGTCTTCCGCGACCTTTCATCAATCAAGGAATTCTATGCTAAATACGCTCATGAAAAGGGATTTTCTTTGAGAAGAAATCTGCACTCCTTCTATGATTCTCGTAACAAAAAAACTGACATTGTGCAATATGTCCGTTATGTTTGTAACAAGCATGGTTTCAAGCATGGGAGTCGGGCGGATCCTAAGAACAAGACAAACTCGGATACTCCTGTTCTCATTGAATTTCAGAAAGAGAAAGAACTTCCCAAGGAAAGGACTAGTTGCCCAACTAGTATTTCGTTGAAGTATGATTCCAATGTTAAAGGTTATCATATATACAAATGGAATGTTTCTCATAACCACCCTTTCCATAAACTCGAGCATTCGAATTACTTGAGGTCAGCTCGAGAGATTAGTGAGCCTTAA 489 0.3845 MDEISSSTNVTQDVGSYSDENKESWQHFVFRDLSSIKEFYAKYAHEKGFSLRRNLHSFYDSRNKKTDIVQYVRYVCNKHGFKHGSRADPKNKTNSDTPVLIEFQKEKELPKERTSCPTSISLKYDSNVKGYHIYKWNVSHNHPFHKLEHSNYLRSAREISEP 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04671 162 Pfam FAR1 DNA-binding domain 38 144 IPR004330 -
Vivi3g04671 162 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 15 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04671 Vivi-Chr3 86052232 86052720 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi3g04671 FAR1 1.7e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04671 - K17604 vvo:131652168 315.849