Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04660 ATGACCTCCTCTTTCTTCTCCGACCTTCTAAATTCCCCCACAGACAGAGACAACCTCAGAAACACCGAAAGATCTCACCATCATCATCGTCCTAATAATGTTTTGTTGGATCAAACCGGTTCCGGTTTACCAAAATTCAAGTCCACACCTCCTCCATCACTTCCTCTCTCTCCCACACCTCTCTTCTCTCCTTCTTACTTTTCCATCCCTCATGGCTTCTCCCTTTCCGAGCTTCTTGACTCTCCAGTTCTTCTCAACTCTTCTCATGTTTTACCATCTCCAACAACCGGATCATTTGCCAATAATCAAAGCTTAAATTGGAAGAATAATAACTATGGTGAAAAGCAGCAAAATGTCAAGTCAGAAGATGAAAACTTCTCAAGATTCTCCTTCCAAGCTCAACCTATGCTTCAAACTTCAACAACCAACACAACTCAAAACGGATGGAGTTTCCAAGAAACAACAAAACAAGATGGCTTAATATCTTCTGGAATGAATATGAGTATGGTGAAAACAGAAAACTCTTCATCAATTCATAGTTTCACACAAGAGAATAATTCTATTAATGGACAAAACAATCACAAGGGAGATTATAGCAATTATCAAACTCAGCCACAGCAACAAGTTCAAACACTTAGTAGAAGATCAGATGATGGATACAATTGGAGAAAGTATGGACAAAAACAAGTGAAAGGAAGTGAGAATCCAAGAAGTTACTATAAATGCACATATCCAAGTTGTCCAACTAAGAAAAAAGTTGAAAGAGCTTTGGATGGACAGGTCACTGAAATAGTTTATAAAGGGAATCATAACCATCCTAAGCCCGTGGCTAACAAGAGGAACATGAGTTCAATGTCTTCCTCTTCGTCGTCACTTGCGAATCCTCCTTCAAATAATCAATATGGAAATGATATGCAAATGGTGTTGGTTGCCACGCCGGAGAATTCTTCTATATCGGTCGGAGATGATGAATATGAGCAGAGTTCTCATAAATCGGGTGGAGATCACGAGTTTTGTGACGATGATCAACCCGATGCCAAAAAATGGAGAATTGAAGGTGAAAATGAGGGAATATCATCAGGAATTGGAAATGGAACAGTGAGGCAACCTAGAGTTGTGGTTCAAACAACAAGTGACATTGATATTCTAATTGATGGGTACAGATGGAGAAAATATGGACAAAAAGTAGTAAAGGGAAACCCAAATCCAAGGAGTTACTACAAGTGCACAAACCCTGGATGTCAAGTTCGAAAACATGTGGAAAGAGCTTCACAAGACCTAAGATCAGTGATAACAACCTACGAAGGAAAACACAACCATGATGTTCCTGCACCACGTGGAAGTGGAAACCTCTCTATCAACAAACCAATACCTAATATACCAACAATGAACAACACCATGAGTGCTAACAATGGATTCTTCAACCATGAGATGCTGCAGAACAATGGATTTCCAATGGATTCTTATGTGAATATGAATCAACAACGTGTGGATAATGTTATTAGAGGTAGAGCCAAGGAGGAGCCTGTAGTAGAAGATGACTCGTTTTTTGATTCTTTGCTATCTTGA 1569 0.3945 MTSSFFSDLLNSPTDRDNLRNTERSHHHHRPNNVLLDQTGSGLPKFKSTPPPSLPLSPTPLFSPSYFSIPHGFSLSELLDSPVLLNSSHVLPSPTTGSFANNQSLNWKNNNYGEKQQNVKSEDENFSRFSFQAQPMLQTSTTNTTQNGWSFQETTKQDGLISSGMNMSMVKTENSSSIHSFTQENNSINGQNNHKGDYSNYQTQPQQQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPSCPTKKKVERALDGQVTEIVYKGNHNHPKPVANKRNMSSMSSSSSSLANPPSNNQYGNDMQMVLVATPENSSISVGDDEYEQSSHKSGGDHEFCDDDQPDAKKWRIEGENEGISSGIGNGTVRQPRVVVQTTSDIDILIDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCQVRKHVERASQDLRSVITTYEGKHNHDVPAPRGSGNLSINKPIPNIPTMNNTMSANNGFFNHEMLQNNGFPMDSYVNMNQQRVDNVIRGRAKEEPVVEDDSFFDSLLS 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04660 522 ProSiteProfiles WRKY domain profile. 378 443 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g04660 522 MobiDBLite consensus disorder prediction 316 343 - -
Vivi3g04660 522 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 79 467 IPR044810 GO:0003700
Vivi3g04660 522 MobiDBLite consensus disorder prediction 17 33 - -
Vivi3g04660 522 MobiDBLite consensus disorder prediction 174 205 - -
Vivi3g04660 522 Pfam WRKY DNA -binding domain 385 440 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g04660 522 Pfam WRKY DNA -binding domain 217 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g04660 522 ProSiteProfiles WRKY domain profile. 217 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g04660 522 MobiDBLite consensus disorder prediction 265 303 - -
Vivi3g04660 522 MobiDBLite consensus disorder prediction 324 343 - -
Vivi3g04660 522 SUPERFAMILY WRKY DNA-binding domain 215 275 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g04660 522 Gene3D WRKY domain 370 436 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g04660 522 SMART WRKY_cls 383 442 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g04660 522 SMART WRKY_cls 216 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g04660 522 FunFam WRKY transcription factor 33 370 436 - -
Vivi3g04660 522 SUPERFAMILY WRKY DNA-binding domain 375 443 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g04660 522 MobiDBLite consensus disorder prediction 1 16 - -
Vivi3g04660 522 Gene3D WRKY domain 202 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g04660 522 FunFam WRKY transcription factor 204 276 - -
Vivi3g04660 522 MobiDBLite consensus disorder prediction 1 57 - -
Vivi3g04660 522 MobiDBLite consensus disorder prediction 276 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04660 Vivi-Chr3 85725935 85729386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04660 43 521 WRKY Transcription Factor Family AT2G38470 43.786 9.14e-108 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi3g04660 WRKY 1.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04660 K13424 - gmx:100127421 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04660 3 85725935 85729386 Vivi3g04660 3 85725935 85729386 ECH