Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04650 ATGAAGCTTTCAACATCAGGGTTGGGTCATCAGGGACATGAAGGAGGAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCGTGTGCGGGGCCCTTAGTGTCCCTACCAACTGCAGGAACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTATCTGCCACAACAAACCGCGAAATCGATGGGCACATACCGAATTATCCTAGCTTGCCACCTCAGTTGGTTTGCCAGCTTCACAATGTCACTATGCATGCGGATGTTGAAACAGATGAAGTATATGCTCAAATGACACTACAGCCGTTGACTCCGGAAGAGCAAAAGGATACGTTTCTTCCTATGGAATTGGGAATTCCAAGTAAGCAGCCCTCAAACTATTTTTGCAAGACTTTAACAGCCAGTGACACCAGCACACATGGAGGATTCTCTGTTCCGCGTCGTGCAGCTGAGAAAGTTTTTCCTCCGCTGGATTTCTCTCAGCAACCACCAGCACAAGAACTAATTGCTAGGGATCTCCATGACGCTGAATGGAAGTTTCGACACATTTTTCGAGGACAGCCAAAACGACACCTTCTTACTACAGGCTGGAGCATATTTGTTAGTGCCAAGAGACTGGTTGCTGGAGATTCCGTGCTTTTCATATGGAATGAAAAGAATCAGCTTCTTTTGGGAATTCGTCGAGCCAGTCGACCTCAAACTGTTATGCCATCATCAGTTTTGTCCAGTGACAGTATGCATATTGGACTTCTTGCAGCTGCTGCTCATGCTGCAGCAACTAATAGCTGTTTTACCGTGTTCTATAATCCAAGGGCTAGTCCGTCTGAGTTTGTCATACCACTTTCGAAATATATCAAAGCCGTGTACCATACACGCATTTCTGTTGGTATGCGCTTCAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGGATAAGTGATCTGGATGCTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTTAAAGTCGGTTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGGGTTTCATTATGGGAAATTGAGCCATTAACAACATTCCCAATGTATCCATCATTGTTTCCCCTCAGATTGAAACGTCCGTGGCATCCCGGCACCTCGTCTTTGCTAGATGGAAGAGATGACGTTGCAAATGGTCTAATGTGGATGAGAGGTGGACCTGCAGACCAAGGTCTCAATTCTCTTAATTTTCAAGGTGCTGGTGGCATGTTACCATGGATGCAGCAGAGACTAGATCCAACTTTGCTCGGAAACGATCAGAATCAACAATACCAAGCCATGTTGGCGGCAGCTGGAATGCAGAACATGGGTAGTGGTTATCTCATGAGGCCACAACAAATGATGAATTTTCAACAACAGCCTATCAATTACCTTCAGTCAGGAAACAATAATTCGCCTTTGCAACTTCAGCAGCCACACGCAATTCCGCAATCGGTGTCTTCTAATATGATGCAACCACAAGGTCAAGTGCTTACTGAAAATCTGTCTCAGCACCTCCTTCAGAAAACAAATAACAATCAAGAAGTCCAAGGTCAACAGCAGCAACATGGTTATCAAGATTCACTTCTTATTCAAAATGATCAACTCCATCAGCGTCAACAACAACAGTCCAATGTGCCATCACCATCGTACTCAAAACAAGATTTCCTGGATTCAAACTTGAAGTTTCCTGCTTCGGCTTCCTCCGGACAAAACATGCTTGGTTCGCTTTGCAATGAAGGAACTGGCAATCTCTTGAATCTGTCAAGTTTATCCAGAAGCGGTCAGTCGTTGATGACCGAACAGTTACCTCAACAATCATGGACTCAGAAGTATGGGAATATGCAGGTCAATGCATTTAGCAACCCAATGTCGCATGCACAATTTTCTGGAAAAGATTTGGCGATGGTGCCACATTGTGATTCAGATACCCAAAACCATACTCTCTCGGGTGTCAATATCGATTCATCTGGCCTTCTACTCCCCACCACTGTCCCAGGTTACACCACTTCATCCGCCGACACTGGTGCGTCTACAATGCAATTAGGGGAGTCGGGATTCCAGAGTTCTCTATACGCCTGCATGCAAGATTCGTCTTCATTTTTGCAAAATGCAGAGCAAAGCGACCCACAAAACCAGAACCCAACATTTGTGAAGGTTTACAAATCGGGTTCGGTTGGGCGTTCACTTGACATCTCTCGGTTCAACAGCTATCGTGAGCTGCGAGAGGAGTTGGGACAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTCGACCGGGAGAATGATGTGCTTCTCCTTGGCGACGATCCGTGGGAATCATTCGTGAATAACGTTTGGTATATCAAAATACTTTCACCGGAAGATATTCAGAAGATGGGAGAAGAGGCGGTAGAAACGCTTGCTCTAGGTTCAGGACAAAGGCTTAACGGCACTGGTGAATCTCACCACATTGTTTCTGGACAACCACCATCAATTGGCTCACTTGAATACTGA 2559 0.4603 MKLSTSGLGHQGHEGGGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREIDGHIPNYPSLPPQLVCQLHNVTMHADVETDEVYAQMTLQPLTPEEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDAEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLLDGRDDVANGLMWMRGGPADQGLNSLNFQGAGGMLPWMQQRLDPTLLGNDQNQQYQAMLAAAGMQNMGSGYLMRPQQMMNFQQQPINYLQSGNNNSPLQLQQPHAIPQSVSSNMMQPQGQVLTENLSQHLLQKTNNNQEVQGQQQQHGYQDSLLIQNDQLHQRQQQQSNVPSPSYSKQDFLDSNLKFPASASSGQNMLGSLCNEGTGNLLNLSSLSRSGQSLMTEQLPQQSWTQKYGNMQVNAFSNPMSHAQFSGKDLAMVPHCDSDTQNHTLSGVNIDSSGLLLPTTVPGYTTSSADTGASTMQLGESGFQSSLYACMQDSSSFLQNAEQSDPQNQNPTFVKVYKSGSVGRSLDISRFNSYRELREELGQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEEAVETLALGSGQRLNGTGESHHIVSGQPPSIGSLEY 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04650 852 FunFam Auxin response factor 294 366 - -
Vivi3g04650 852 SUPERFAMILY CAD & PB1 domains 722 800 - -
Vivi3g04650 852 Gene3D - 294 366 - -
Vivi3g04650 852 CDD B3_DNA 129 230 IPR003340 GO:0003677
Vivi3g04650 852 Gene3D - 128 231 IPR015300 -
Vivi3g04650 852 MobiDBLite consensus disorder prediction 833 852 - -
Vivi3g04650 852 FunFam Auxin response factor 721 815 - -
Vivi3g04650 852 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 815 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi3g04650 852 Pfam B3 DNA binding domain 130 231 IPR003340 GO:0003677
Vivi3g04650 852 Gene3D - 722 815 - -
Vivi3g04650 852 ProSiteProfiles PB1 domain profile. 726 810 IPR000270 GO:0005515
Vivi3g04650 852 SMART B3_2 130 232 IPR003340 GO:0003677
Vivi3g04650 852 Pfam AUX/IAA family 715 810 IPR033389 -
Vivi3g04650 852 MobiDBLite consensus disorder prediction 546 567 - -
Vivi3g04650 852 Pfam Auxin response factor 256 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi3g04650 852 SUPERFAMILY DNA-binding pseudobarrel domain 114 259 IPR015300 -
Vivi3g04650 852 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Vivi3g04650 852 FunFam Auxin response factor 128 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04650 Vivi-Chr3 85350750 85357943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04650 100 818 B3 DNA Binding Superfamily AT5G37020 67.857 0.0 908
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi3g04650 AUX_IAA 1.5e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04650 - - tpra:123913862 1521.52