Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04647 ATGCGACCACAACACAACCTCCTACTTACCTTAATCACCCTGCTACACTCATGGAACCACTTCTCCCGTCTCACACAAGCTGACCCTCAAACACGTTTAATCAACAAAGGTTGTAGCCAATACAACGCAACAAACTTGTCCAATTTCTACCAAAATCTAAACGCAACTCTCTCAGACTTGAAATCACAGGTGGCAAATGAAAGCAAGCATTTTGCAACGGCACAATCCGCCAAAGGAGCAAACCCTGTTTATGCTTTGTTTCAGTGCAGGAATTACCTCTCTAATTCTGATTGCGCCGCTTGCTTCACCGTCGCCGCCGCACAAATACGTAACTGCTCCGCTGGTTCAAACGGTGCTCGGGTTATTTACGATGGTTGCTTCCTTAGGTACGAGAGCAATGGATTCTTCGACCAAACAACTCTACCTGGAAACAGTATGATTTGTGGAACCCAAACAGCAAATGGAGCAGCTGCTTTTACTGCAGCAGCACAACAAATCCTACTCAATTTACAAACAGCAACCCCCAAAATTCCTGGTTTCTTTGCAGCTACAAAGACACCGGTTTCTGGAACTGGAAACGCAATCTATGCCATTGCTCAATGTGCTGAATCAGTCACTCAAAGTGGTTGTTCAGATTGCTTAACAGTTGGATTCAACAACATACAGAGCTGTTTTCCTAATGCAGATGGTAGAGCATTTGATGCTGGTTGTTTTATGAGATACTCAGAAACATCTTTCTTTGCTGATAACCAGACCATTGATATTACTCCGTTCCTAAAACAAGGTTCAAGTAAGAAGGGAGCCATTATTGGTGGTGTTGTTGGAGGTGTAGCCCTTATTCTGATCATTCTCATTGCACTATTTGTTTGGCTTAGGCTCAACAAGAAACCCAAGAGACATCACAGAGGTGACATATTGGGAGCGACTGAGTTGAAAGGTCCACTTACTTACCGATATAACGATTTGAAGTCTGCAACAAAAAATTTTAACGAGGAAAATAAACTTGGAGAAGGAGGTTTTGGAGATGTATACAAGGGAACTCTGAAAAATGGTAAAGTAGTTGCTGTCAAGAAATTGATTTTAGGCCATTCCGGGAAGATGGATGAACAATTTGAAAGTGAAGTGAAGCTCATAAGTAATGTCCATCACAGGAATTTAGTTCGACTTCTCGGATGTTGCAGTAAAGGCCAAGAAAGAATTCTTGTTTATGAATACATGGCAAACAACAGCCTTGACAGATTCTTATTCGGTGAAAAGAAAGGTTCCCTTAATTGGATTCAAAGGTATGATATAATTTTAGGCACAGCAAGAGGTTTGGCCTATCTGCATGAAGATTTCCATGTTTGCATCATACATAGAGATATAAAGACTAACAACATCCTCTTGGATGATGATCTTCAACCTAAAATTGCTGATTTCGGATTGGCAAGGCTTTTACCGGAAGATCAATCTCATCTTAGCACAAGATTTGCAGGAACATTGGGATACACTGCACCAGAATACGCAATCCACGGTCAGTTATCAGTGAAGGCTGATACCTACAGTTTTGGCGTTGTAGTCCTAGAAATCATAAGTGGCCAAAAGAGTAGTGAGTTAAGGGATGATGCCGATGGTGAATTCCTTCTTCAAAAGGCTTGGAAACTATATGAGGAAGAAAGACACTTGGAGTTAGTTGACAAGACACTGAACCCTAGTGACTATGATGCACAGGAGGTGAAGAAAGTTATAGAGATTGCATTACTTTGCACTCAAGCAACAGCCGCTACAAGACCAACTATGTCTGAAGTACTAGTTCTACTCAAAAGCAAGAACTTTGCGGAGCATATGAAACCAACCATGCCTGTCTTTGTTAACACTAACCTAAGACCTCGGACAGATACCTCTACCTCAACTGCTTCTTCAAAATCTAATGCAACTGTTTCCACTTCTATATTATCAGCTAGATGA 1947 0.414 MRPQHNLLLTLITLLHSWNHFSRLTQADPQTRLINKGCSQYNATNLSNFYQNLNATLSDLKSQVANESKHFATAQSAKGANPVYALFQCRNYLSNSDCAACFTVAAAQIRNCSAGSNGARVIYDGCFLRYESNGFFDQTTLPGNSMICGTQTANGAAAFTAAAQQILLNLQTATPKIPGFFAATKTPVSGTGNAIYAIAQCAESVTQSGCSDCLTVGFNNIQSCFPNADGRAFDAGCFMRYSETSFFADNQTIDITPFLKQGSSKKGAIIGGVVGGVALILIILIALFVWLRLNKKPKRHHRGDILGATELKGPLTYRYNDLKSATKNFNEENKLGEGGFGDVYKGTLKNGKVVAVKKLILGHSGKMDEQFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANNSLDRFLFGEKKGSLNWIQRYDIILGTARGLAYLHEDFHVCIIHRDIKTNNILLDDDLQPKIADFGLARLLPEDQSHLSTRFAGTLGYTAPEYAIHGQLSVKADTYSFGVVVLEIISGQKSSELRDDADGEFLLQKAWKLYEEERHLELVDKTLNPSDYDAQEVKKVIEIALLCTQATAATRPTMSEVLVLLKSKNFAEHMKPTMPVFVNTNLRPRTDTSTSTASSKSNATVSTSILSAR 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04647 648 SUPERFAMILY Protein kinase-like (PK-like) 313 622 IPR011009 -
Vivi3g04647 648 Pfam Protein tyrosine and serine/threonine kinase 332 597 IPR001245 GO:0004672|GO:0006468
Vivi3g04647 648 MobiDBLite consensus disorder prediction 618 648 - -
Vivi3g04647 648 FunFam Cysteine-rich receptor-like protein kinase 2 30 135 - -
Vivi3g04647 648 SMART serkin_6 329 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04647 648 CDD STKc_IRAK 335 601 - -
Vivi3g04647 648 ProSiteProfiles Gnk2-homologous domain profile. 141 246 IPR002902 -
Vivi3g04647 648 ProSiteProfiles Gnk2-homologous domain profile. 31 135 IPR002902 -
Vivi3g04647 648 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 84 635 - -
Vivi3g04647 648 Gene3D Transferase(Phosphotransferase) domain 1 406 615 - -
Vivi3g04647 648 FunFam Cysteine-rich receptor-like protein kinase 2 295 405 - -
Vivi3g04647 648 ProSiteProfiles Protein kinase domain profile. 329 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04647 648 Gene3D - 144 246 IPR038408 -
Vivi3g04647 648 Gene3D - 30 135 IPR038408 -
Vivi3g04647 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Vivi3g04647 648 FunFam Cysteine-rich receptor-like protein kinase 2 406 608 - -
Vivi3g04647 648 Coils Coil 50 70 - -
Vivi3g04647 648 Gene3D Phosphorylase Kinase; domain 1 294 405 - -
Vivi3g04647 648 FunFam Cysteine-rich receptor-like protein kinase 2 143 246 - -
Vivi3g04647 648 ProSitePatterns Protein kinases ATP-binding region signature. 335 358 IPR017441 GO:0005524
Vivi3g04647 648 Pfam Salt stress response/antifungal 38 132 IPR002902 -
Vivi3g04647 648 Pfam Salt stress response/antifungal 148 243 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04647 Vivi-Chr3 85081653 85087684 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04647 3 648 Receptor kinase-like Gene Family AT1G70520 37.026 7.73e-130 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi3g04647 PK_Tyr_Ser-Thr 4.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04647 - - gmx:100813585 981.859