Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04643 ATGATGCTGCAAGTTAAGCTAGTCTTCACAACGTTGGTGTGTTGGAACATAATAACTAGTTATAACTGTGTAGTTGGAGATTCACAAACAAGTATAGTACTAATCAGTGGTTGCAGCACATATAACGCATCAAATTTGCATAGCTTCTATGCAAACATTAATGGAACATTTTCAGATTTGAGAAATCAAATTAGCGATGGAAGCAAACACTTTGCAACAGCACAAGAAGCAAGAGGAGATGTGATGACATATTCTCTTTTTCAATGCAGAAATTACCTCTCCAAAAAGGATTGTGTTGCTTGCTTCAATACTTCTTCTACTAAAATTCGTGACTGCTCAGCTTCCAATGGTGCAAAACTCATCTATGATGGGTGTTTCTTAAGGTACGAGAGTGAAAGGTTCTACGATCAAACAAATCAACCTGGAGGTGGTATATTATGTGGGAACAAGACTGCAAAGGAAGGTGCCTCTTTTGGAACAATTGGACTAAAAGTGTTAATGGATCTCCAATTAGCAACACCAAAAATTAAAGGTTTTTTTGCAGCTACTAAGACAGTGGTGAATCCTGGTAGCAATAATTCAATTTATGCCATTGCACAGTGTGTTGAAACTGCCACGGAAAGTACTTGTCGTGATTGCATGAAAGTTGGATACAACAATTTGCGAACTTGTCTTCCTAATACAGATGGTAGAGCATATGATGCAGGATGTTTTATGAGATACTCAGACACACCCTTCTTTGCTGATAATCAGGCCATTGATATCAAAATATATTTAAATCAAGGTGGTTCAAGCAACAAATGGGCCATTATAGGTGGCGTTGTTGGCGGTGTAGGTCTTGTTGCGATCATTCTTGCAATTTTAGCTTGGCAACGATACAGAAAACCTAAGAGAGCTCTTAGAGGCAACATATTGGGAACAACCAAGTTGAAAGGTCCAATTAAATACAAGTATAGTGATTTGAAAGCTGCAACAAAAAACTTCAGTGAAGAAAATAAACTGGGAGAAGGAGGGTTTAGTAAAGTATACAAGGGTACTCTGAAAAATGGAAATGTTGTAGCAGTCAAGAAATTGGTTTTGGGAAATTCCAGCAAGATAGACAATGATTTTGGAAGTGAAGTCAGGCTTATAATAAGCAATGTTGATCATAGGAATCTTGTTGGACTTCTTGGTTGTTGTAGTAAAAAACAAGAGAAAATCCTTGTTTATGAATACATGGCAAACAGCAGCCTAGACAAATTCTTATTTGGTGAAAAACAAGGCTCCCTCAATTGGAAACAAAGGTGTGATATAATTTTAGGCACAGCAAGAGGACTGGCCTACCTACATGAGGAATTCCACATTCCCATTATACACAGAGATATAAAGAGTAGCAATATCCTCCTTGATGATAATCTTCATCCCAAAATTGCTGATTTTGGATTGGCGCGGCTTCTGCCGGGGAATCGATCTCTAAGAACAGGAGTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATTCATGGTCAATTATCAGAAAAGGCTGATACCTACAGCTATGGTATTGTAGTCCTAGAAATCATAAGCGGTCAAAAGAGTACAAAAGTAAAGGAAGATGATGATGGTGATTACCTTCTTCAAAAGTCATGGAAACTGTATGAGAGAGGCAGGCACTTGGAGCTCGTGGACAAGACCTTAGACCCTAGTGACTATGATGGAGAAGAAGTGAAGAAAACGATAGAGATTGCTTTACTATGCACTCAAACATCAGCAGGAATGAGACCAACAATGTCTGAAGTAGTAGTCCTCCTCCAAACCAAGAGTTTAGTGGAGCACCTACAACCAACTATGCCTATGTTTATAGATACAACTCTTAAGTATAGTGAAGGATACTCAACCTCAACTGGTTCTTCTACATCTAATGCTACTGCTTCCTTTTCAATTATATCAGCTCGATGA 1944 0.3858 MMLQVKLVFTTLVCWNIITSYNCVVGDSQTSIVLISGCSTYNASNLHSFYANINGTFSDLRNQISDGSKHFATAQEARGDVMTYSLFQCRNYLSKKDCVACFNTSSTKIRDCSASNGAKLIYDGCFLRYESERFYDQTNQPGGGILCGNKTAKEGASFGTIGLKVLMDLQLATPKIKGFFAATKTVVNPGSNNSIYAIAQCVETATESTCRDCMKVGYNNLRTCLPNTDGRAYDAGCFMRYSDTPFFADNQAIDIKIYLNQGGSSNKWAIIGGVVGGVGLVAIILAILAWQRYRKPKRALRGNILGTTKLKGPIKYKYSDLKAATKNFSEENKLGEGGFSKVYKGTLKNGNVVAVKKLVLGNSSKIDNDFGSEVRLIISNVDHRNLVGLLGCCSKKQEKILVYEYMANSSLDKFLFGEKQGSLNWKQRCDIILGTARGLAYLHEEFHIPIIHRDIKSSNILLDDNLHPKIADFGLARLLPGNRSLRTGVAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIISGQKSTKVKEDDDGDYLLQKSWKLYERGRHLELVDKTLDPSDYDGEEVKKTIEIALLCTQTSAGMRPTMSEVVVLLQTKSLVEHLQPTMPMFIDTTLKYSEGYSTSTGSSTSNATASFSIISAR 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04643 647 Gene3D - 144 246 IPR038408 -
Vivi3g04643 647 Gene3D - 30 134 IPR038408 -
Vivi3g04643 647 ProSiteProfiles Gnk2-homologous domain profile. 31 134 IPR002902 -
Vivi3g04643 647 FunFam Cysteine-rich receptor-like protein kinase 2 142 246 - -
Vivi3g04643 647 FunFam Cysteine-rich receptor-like protein kinase 2 406 607 - -
Vivi3g04643 647 FunFam Cysteine-rich receptor-like protein kinase 2 293 405 - -
Vivi3g04643 647 CDD STKc_IRAK 334 600 - -
Vivi3g04643 647 ProSiteProfiles Gnk2-homologous domain profile. 140 246 IPR002902 -
Vivi3g04643 647 FunFam Cysteine-rich receptor-like protein kinase 2 29 134 - -
Vivi3g04643 647 ProSitePatterns Protein kinases ATP-binding region signature. 334 357 IPR017441 GO:0005524
Vivi3g04643 647 SUPERFAMILY Protein kinase-like (PK-like) 310 599 IPR011009 -
Vivi3g04643 647 SMART serkin_6 328 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04643 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Vivi3g04643 647 Gene3D Phosphorylase Kinase; domain 1 294 405 - -
Vivi3g04643 647 Pfam Protein kinase domain 329 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04643 647 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 85 629 - -
Vivi3g04643 647 Pfam Salt stress response/antifungal 38 131 IPR002902 -
Vivi3g04643 647 Pfam Salt stress response/antifungal 153 243 IPR002902 -
Vivi3g04643 647 Gene3D Transferase(Phosphotransferase) domain 1 406 611 - -
Vivi3g04643 647 ProSiteProfiles Protein kinase domain profile. 328 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04643 Vivi-Chr3 84858727 84864278 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04643 17 647 Receptor kinase-like Gene Family AT1G70520 35.604 3.01e-122 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi3g04643 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04643 - - gmx:100305452 843.188