Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04624 ATGAAAAAGGATCAAGATTCAGTAGGAAGTAGAGTTTGTTTGAATTCTGGATCACATTCTGTTACACATGTTCAACTCAGCAATCAGTTATCTTGGGCTAATGATTATACTCTTAAGGTAAGAAAACCATATACTATAACAAAGCAAAGAGAAAAATGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCCTTAAAGCTGTATGGCCGCGCCTGGCGACGCATTGAAGAACATGTTGGTACAAAGACTGCGGTCCAGATTCGAAGTCATGCACAGAAGTTTTTCTCTAAGGTTCTTCGCGACAAAAGTGAGTGCATTACAAACACTAAGGAGTCTATTAAAATTCCTCCTCCAAGACCGAAACGTAAGCCTATGCATCCTTACCCTCGTAAGCAGGCTGAGACGGCTGGTAGTAAAGAAATTTCAGTCCCGGAAAAGGTAATAAATTCTAATTCTCTAAAGGCATCAGATTTTGATCAAGAAAACCAATCGCCGAAATCAGTATTGCATACACCCGGTTGCGAAAGCCTTGATTCGTCGGATTCAGATACGCCAAATGGAAGTTTGTCTCCAAGATCTTCGATTAGTTGTGTCGGTACAAGTGTTTTCACACATGCTGAATTCAAAACACAAACAGAGGAAGAAGCTGGACTAGATGCTGATTCACCTCCTGATGAGAAACCTTTTATGAAACCTGAGATTCTCCCGAATGAAAGTGTTTCTGCAAAAGAAAGCATAGCAGAAGAATCGTCTCTTCGAAGTCTTAAACTTTTTGGGATGACTCTGTTTGTAACAGATACTTCTTCTTCAACAATTGAGGCATGCAAGCCAATACCTCTTGTCAAACACGTAAGCAAGGGTGAACAAAAATCGGATCGCCTTGGCAATGCTTCACTATGTGAAACATCAGCCATATCTCAGTTAAGAGTGAGAATGAGACGCGAAACATGCGGAAAAGGGTTTGTGCCTTATAAAAGGTGCATGTCAAAGAAGGAAAACCAGTCTTCATCTGCAGCAGCTGATGAAAGATAA 1032 0.406 MKKDQDSVGSRVCLNSGSHSVTHVQLSNQLSWANDYTLKVRKPYTITKQREKWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDKSECITNTKESIKIPPPRPKRKPMHPYPRKQAETAGSKEISVPEKVINSNSLKASDFDQENQSPKSVLHTPGCESLDSSDSDTPNGSLSPRSSISCVGTSVFTHAEFKTQTEEEAGLDADSPPDEKPFMKPEILPNESVSAKESIAEESSLRSLKLFGMTLFVTDTSSSTIEACKPIPLVKHVSKGEQKSDRLGNASLCETSAISQLRVRMRRETCGKGFVPYKRCMSKKENQSSSAAADER 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04624 343 Gene3D - 52 98 - -
Vivi3g04624 343 MobiDBLite consensus disorder prediction 209 232 - -
Vivi3g04624 343 SMART sant 49 97 IPR001005 -
Vivi3g04624 343 MobiDBLite consensus disorder prediction 108 195 - -
Vivi3g04624 343 NCBIfam myb-like DNA-binding domain, SHAQKYF class 48 97 IPR006447 GO:0003677
Vivi3g04624 343 SUPERFAMILY Homeodomain-like 44 97 IPR009057 -
Vivi3g04624 343 CDD SANT 52 95 IPR001005 -
Vivi3g04624 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 99 IPR017930 -
Vivi3g04624 343 MobiDBLite consensus disorder prediction 144 195 - -
Vivi3g04624 343 ProSiteProfiles SANT domain profile. 48 99 IPR017884 -
Vivi3g04624 343 PANTHER SWI/SNF COMPLEX-RELATED 29 301 - -
Vivi3g04624 343 MobiDBLite consensus disorder prediction 209 233 - -
Vivi3g04624 343 ProSiteProfiles Myb-like domain profile. 45 95 IPR001005 -
Vivi3g04624 343 Pfam Myb-like DNA-binding domain 50 93 IPR001005 -
Vivi3g04624 343 FunFam protein REVEILLE 6 isoform X1 52 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04624 Vivi-Chr3 84261099 84263973 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi3g04624 Myb_DNA-binding 3.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04624 - - psat:127084287 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04624 3 84261099 84263973 Vivi3g04624 3 84261099 84263973 ECH