Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04623 ATGTCACTTGGAGTATTAATCTCTATTTACATTATTACCCTTCAACTAATTATTCTATTCACTTCACCCACTACCTCTCATTACTCTTCTCCTTCACCTCCAGCCGCACCATTCTCCGAATCCCCTAACAAACCTCCCTCTCCTCCCGCCGCGGAATGGCTCTCCGCCCACGCCACATACTCCTCCTCCTCCGATGACACCAGAGACGCAGTCGACGGCGCATGCGGCTACGGCGACGCTCTCAGAGACGGTTACGGCATCACCGCAGCTTCTCTTAGCGAAACTCTCTTTCAACACGGCCAGATCTGTGGCGCATGTTATGAGCTTCGCTGTTTTGAGGAGGATGTTCCCTTCGACCGGCGGTGGTGCGTCTCCGGCAGGTCTATTGTTGTCACCGCTACTAATTTCTGTGCTCCGAACTACGGTTTTGACGCGGAGAGTAACGGTGGACATTGTAACCCTCCCAAGCAGCATTTCGTGATTCCGGTTGAAGCATTTGAGAAGATTGCGATTTGGAAAGGGGGTAGCATGCCCGTGGAGTATCGCAGGACAAAGTGCACAAGGGAAGGGAGAATGCGGTTTACAATTACAGGTTCTGGCATATTCAATTCAGTGCTGATAAGTAATGTGGCTGGCATAGGTGACATTGTTGGTGTAAAAGTTAAGGGTTCAAAGACTGGTTGGATTCCTATGGGTAGGAATTGGGGTCAAAATTGGCATGTAAATGCATTGCTACAAAATCAACCTCTTTCATTTGAGGTCACTAGTAGTGATGGTGTAACCATTACATCTTACAATGTAGCTCCTAAGAATTGGACCTTTGGACAAACCTTTGAAGGCAAACAATTTGAGTCTTAG 858 0.4802 MSLGVLISIYIITLQLIILFTSPTTSHYSSPSPPAAPFSESPNKPPSPPAAEWLSAHATYSSSSDDTRDAVDGACGYGDALRDGYGITAASLSETLFQHGQICGACYELRCFEEDVPFDRRWCVSGRSIVVTATNFCAPNYGFDAESNGGHCNPPKQHFVIPVEAFEKIAIWKGGSMPVEYRRTKCTREGRMRFTITGSGIFNSVLISNVAGIGDIVGVKVKGSKTGWIPMGRNWGQNWHVNALLQNQPLSFEVTSSDGVTITSYNVAPKNWTFGQTFEGKQFES 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04623 285 Pfam Expansin C-terminal domain 192 269 IPR007117 -
Vivi3g04623 285 SMART dpbb_1 88 181 IPR007112 -
Vivi3g04623 285 CDD DPBB_EXPA_N 52 186 - -
Vivi3g04623 285 PRINTS Expansin signature 84 98 IPR002963 GO:0009664
Vivi3g04623 285 PRINTS Expansin signature 237 258 IPR002963 GO:0009664
Vivi3g04623 285 PRINTS Expansin signature 149 166 IPR002963 GO:0009664
Vivi3g04623 285 PRINTS Expansin signature 266 282 IPR002963 GO:0009664
Vivi3g04623 285 PRINTS Expansin signature 166 179 IPR002963 GO:0009664
Vivi3g04623 285 PRINTS Expansin signature 190 202 IPR002963 GO:0009664
Vivi3g04623 285 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Vivi3g04623 285 Pfam Lytic transglycolase 90 181 IPR009009 -
Vivi3g04623 285 PRINTS Expansin/Lol pI family signature 266 280 IPR007118 GO:0005576
Vivi3g04623 285 PRINTS Expansin/Lol pI family signature 93 111 IPR007118 GO:0005576
Vivi3g04623 285 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Vivi3g04623 285 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Vivi3g04623 285 PRINTS Expansin/Lol pI family signature 174 190 IPR007118 GO:0005576
Vivi3g04623 285 PRINTS Expansin/Lol pI family signature 52 67 IPR007118 GO:0005576
Vivi3g04623 285 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 201 280 IPR007117 -
Vivi3g04623 285 Gene3D - 191 283 IPR036749 -
Vivi3g04623 285 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 191 IPR007112 -
Vivi3g04623 285 MobiDBLite consensus disorder prediction 35 49 - -
Vivi3g04623 285 Gene3D - 40 187 IPR036908 -
Vivi3g04623 285 PANTHER EXPANSIN-A15 25 283 IPR002963 GO:0009664
Vivi3g04623 285 SUPERFAMILY PHL pollen allergen 189 280 IPR036749 -
Vivi3g04623 285 SUPERFAMILY Barwin-like endoglucanases 50 209 IPR036908 -
Vivi3g04623 285 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04623 Vivi-Chr3 84234105 84241232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04623 52 285 Expansin Gene Family AT3G03220 68.376 3.04e-121 346
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04623 3 84234105 84241232 Vivi3g04623 3 84234105 84241232 ECH