Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04599 ATGACAAACACACCTTTCTCTTTGGTTCTTTTGTTCTTCTCCCTTTTCATGCCTACCCTTATTTCTTCTACAACTCTTCAAAATCCTGAATTGGTTGTCCATGAAGTAAACAGCAAAATTAATGCCTCTTCAGCTAGAAGAAATTTAGGGTACCTATCTTGTGGAAGTGGAAACCCCATTGATGATTGTTGGAGATGTGACTCCAATTGGGAGAAAAACAGACAAAGGCTAGCGGATTGCGCAATTGGGTTTGGCAAAAACGCAATGGGTGGAAAAAACGGTAAAATTTACGTTGTAACAGACTCGGGCGATGACGATCCAGTGAGTCCAAAGCCGGGAACACTCCGTTACGCGGTGATCCAAGAGGAACCATTATGGATAATCTTCGCGCGAGACATGGTGATAAAATTAAAAGAAGAATTAATCATGAACTCTTTCAAAACAATTGATGGTAGAGGTGCTAGTGTGCACATTGCTGGTGGTCCATGCATTACTATACAATTTGTGACCAATATTATCATACATGGAATAAATATTCATGATTGTAAACAAGGTGGGAATGCTATGGTGAGGGACTCCCCACGGCATTTCGGGTGGAGGACTATATCGGACGGCGACGGTGTGTCGATTTTTGGTGGAAGTCATGTTTGGGTTGATCATTGCTCTTTGTCTAATTGTGAAGATGGTTTGATTGATGCTATTTATGGGTCCACTGCTATAACAATTTCTAACAATTTTATGACTCACCATGATAAGGTCATGCTGTTGGGTCATAGTGATTCTTATATTAAAGATAAAAATATGCAAGTCACAATTGCTTTTAATCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGGTGTAGGCTAGGATATTTCCATGTAGTAAACAATGACTACACTCACTGGGAAATGTATGCCATTGGAGGAAGTGGAAACCCTACCATAAACAGCCAAGGCAACAGATTTGTTGCACCCAATATCAGATTCAGCAAAGAGGTTACAAAGTATGAAGATGCACCAGTGAGTGAGTGGAAGAATTGGAACTGGAGATCAGAGGGAGATTTGTTGTTAAATGGTGCATTTTTCACTCCTTCTGGTGGTGGAACTTCATCTAGCTATGCAAGAGCTTCAAGTTTGAGTGCAAGACCTTCTTCTCTTGTGGGTTCTATAACTGTTGCTTCTGGAACACTTAACTGTAAGAAAGGTTCACCTTGCTAG 1221 0.4062 MTNTPFSLVLLFFSLFMPTLISSTTLQNPELVVHEVNSKINASSARRNLGYLSCGSGNPIDDCWRCDSNWEKNRQRLADCAIGFGKNAMGGKNGKIYVVTDSGDDDPVSPKPGTLRYAVIQEEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNAMVRDSPRHFGWRTISDGDGVSIFGGSHVWVDHCSLSNCEDGLIDAIYGSTAITISNNFMTHHDKVMLLGHSDSYIKDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSGNPTINSQGNRFVAPNIRFSKEVTKYEDAPVSEWKNWNWRSEGDLLLNGAFFTPSGGGTSSSYARASSLSARPSSLVGSITVASGTLNCKKGSPC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04599 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Vivi3g04599 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Vivi3g04599 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Vivi3g04599 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Vivi3g04599 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Vivi3g04599 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Vivi3g04599 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Vivi3g04599 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Vivi3g04599 406 SUPERFAMILY Pectin lyase-like 40 378 IPR011050 -
Vivi3g04599 406 Gene3D - 57 399 IPR012334 -
Vivi3g04599 406 FunFam Pectate lyase 57 399 - -
Vivi3g04599 406 PANTHER PECTATE LYASE 18-RELATED 22 404 IPR045032 GO:0030570
Vivi3g04599 406 SMART amb_all 132 329 IPR002022 -
Vivi3g04599 406 Pfam Pectate lyase 140 323 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04599 Vivi-Chr3 83420424 83422933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04599 1 406 Polysaccharide Lyase AT4G24780 80.835 0.0 656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04599 3 83420424 83422933 Vivi3g04599 3 83420424 83422933 ECH
Vivi1g02239 1 47181530 47183493 Vivi3g04599 3 83420424 83422933 ECH
Vivi3g04599 3 83420424 83422933 Vivi1g02239 1 47181530 47183493 ECH
Vivi1g02239 1 47181530 47183493 Vivi3g04599 3 83420424 83422933 PCT