Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04588 ATGATGGACGAGCGGCGCCATTCTGTTGATATACCGATTTCTAAGACTCTTGTGGCATTGAGGAGAGTGAGGTCATTGAGGGATCCATCTACTAACTCTATGATCAAACGTTCTTCTTTGATTGACAACTTACATTGGGATAACCGTTCCGGAAATGGGATTTCTCTGCTGTTTCCGGAGGATGTTCATGTTTGCGATTCTGATGATAGTGTTGCTTTTAGAACAAGGAGTTCAGGTTTTAAGGAGCAAAGAGAGCTTGGTGCTAGTGGTTCAGAATTGCATCATGGTCTGTTGAATTCACGGATGTATCAACCAAGTGTTTATGGAAATAAATCGCCTAATGAAAGCTGTGGTAGTAACCACGGAGGGAAAGGATTTGGTATCAATGATTTTGAGGATGGGGAATTAAGCTTTAGAACAACGGGCAGATCGTCTAAATTAGGGAGAATAGATCGCTTTAAGTCGGCCAAAAAGCCCCCGCGCAAGAGTCAAGTTAAACCATCTGATGTGATGGGAGATACTGCTAGCCATTTGAGCAGTCCGTGCCTTTCTGTTCGTGATAGTTTATTGCGCCATGGTTCCTCGGGGTATATGGATCAAGATTTTGATGTTCAAGATAATAGTGATAGTGGATGTGGATTAAGTTATTGTTGGTCAAAGTCACCAAGGTTTATAGAGTCGGATATTTATTGTGAGACAGAAGATCGTCCCTTGATATTGCATTGCGTGGAGGACATGGAACTTCATGAACGTAGAAGCACGAGACTTAGTGGTGGTGAAGTTAGTCCAAATTTGGAAACACCTAGAATGTTTTCAATAAAATTCAGGCCTAAATTGTTTGGTGATTTAGTGGGACAAGATGTGGTTGTTAGGTCTCTTTTGGGTGCAATCTCCAGTGGAAGGATAACATCATTTTATCTTTTCCATGGTCCACGCGGTACTGGCAAGACATCTGCGTCAAGAATATTTGCTTCTGCGCTGAATTGCCTTGCTGTTGGGGAGCAAAGACCGTGTGGTCTGTGTAGAGAATGTGTTCTATTCTTTTCCGGAAGAAGTAAAGATGTTAAGGTAGTGGATTCTATGAAAATCAATCAAACAGACCAGGTTAAATCTCTTGTTAAGAGTGCGTGTTCTCCTCCAGTTTCGTCACGTTTTAAGATTTTCATTATCGATGAGTGCCAGTTATTGAACGGGGAGACATGGGCTTGCCTTTCAAATAACCTAGAAAACATTTCTCAACATGTGGTTTTTATGATGATCACTCCTGATTTGGATAAGCTTCCTCAAAGTGCAGTTTCCCGGGCTCAGAGGTATTACTTTCCAAAGGTTAAAGACGCTGATATTACACGCCGATTAGAAAGAATATGTGCAGAAGAAAGTCTTGATTATGAACAAGCTGCTTTAGACCTAATTGCTGCAAAATCCTCTGGTTCTGTTAGAGATGCCGAAATTATGCTTGATCAGCTAAGTTTGCTTGGAAAAAAGATTAAAGTTTCCTTAGTTTATGAGCTTACCGGGATTGTTTCAGATGATGAATTGTTTGATTTGCTAGATTTGGCCCTATCACCTGACACTTCAAATACAGTTATAAGAGCTCGTGAGCTGATGAGATCGAGAATAGATCCTTCACAACTTGTGTCTCAGTTGGCAAATCTCATAATGGACATCCTTGCGGGGAAATGTGATTATGAAGCCAGAAGTAGATTTTCTAGTAGATACACATCGGAAGCAGACCTTCAGAAACTAAGCCATGCGTTGAGAATACTCTCCGATGCCGAGAAGCAATTAAGAATTTCAAAAAATCAAACAACGTGGTTCACTGTAGCTCTTCTACAGTTAAGCTCTATTGATTATCCTTCCACAGATGCAAATGGTGCCAAGTTGCTTCTGAGAGGGCAGAGCTTGGAACACCTTTCTACAGGTGGTTGTGAAAACAAGTCATTTAGATTAGTGGCACACGAGGATCACGAAGGAACACTGGATTCCATATGGTATAGAGCTACCGGGATATGCCAATCTAGTCAGCTCAAAAATTTTCTCAGAAAGAAGGGAAACTTGTCTTCACTTCATGTTGATCAATCTACTTCATGTCTTGCTATTGCAGAGTTGGAGTTTGGCCATCACCGCCATGTATCCAGGGCCGAGAAGTCATGGAAATTGATAGCAAGTTCCTTGCAACGCATATTGGGTTGCAACATTGAGTTGAGGATCACTCATGTACCTCATACTTTTAATTCACCAAAGAGGTTATCTTTCAACATCTTTAGTTGTGCGCGCAACATACAAGAAAGTGAAATAGACTATGCTGATCACACTTCTCAAAAATCCATGATGAAGAATACAACACTATCTTCTTCCTCTGATTGTGGATCCCAGGAGGCACCACTAAAGTCTTATGAAGGCATGGATGTCATAACGACTCTGAGGAGTTGTGAAGGGAACTTGCTCTGCTCAAGAGAAAGATTTTTGAATCGGCCTTCTTCTCTAGAAACTCTGGGAGCATCATGTTCAAGAGTTGATTCTTACAATGAAGAGGGACACAATGGTGCACATTTAGTTCCATATGTTCCCAATTCCGACAATCAGTCTAACTGTTTTCCTCAAACTCTCTGGCTTCAAAAGAAGTCCCCAGCTTCACATTCTTCCAAATTGTCTTTTCAGGGTATCTAG 2670 0.4124 MMDERRHSVDIPISKTLVALRRVRSLRDPSTNSMIKRSSLIDNLHWDNRSGNGISLLFPEDVHVCDSDDSVAFRTRSSGFKEQRELGASGSELHHGLLNSRMYQPSVYGNKSPNESCGSNHGGKGFGINDFEDGELSFRTTGRSSKLGRIDRFKSAKKPPRKSQVKPSDVMGDTASHLSSPCLSVRDSLLRHGSSGYMDQDFDVQDNSDSGCGLSYCWSKSPRFIESDIYCETEDRPLILHCVEDMELHERRSTRLSGGEVSPNLETPRMFSIKFRPKLFGDLVGQDVVVRSLLGAISSGRITSFYLFHGPRGTGKTSASRIFASALNCLAVGEQRPCGLCRECVLFFSGRSKDVKVVDSMKINQTDQVKSLVKSACSPPVSSRFKIFIIDECQLLNGETWACLSNNLENISQHVVFMMITPDLDKLPQSAVSRAQRYYFPKVKDADITRRLERICAEESLDYEQAALDLIAAKSSGSVRDAEIMLDQLSLLGKKIKVSLVYELTGIVSDDELFDLLDLALSPDTSNTVIRARELMRSRIDPSQLVSQLANLIMDILAGKCDYEARSRFSSRYTSEADLQKLSHALRILSDAEKQLRISKNQTTWFTVALLQLSSIDYPSTDANGAKLLLRGQSLEHLSTGGCENKSFRLVAHEDHEGTLDSIWYRATGICQSSQLKNFLRKKGNLSSLHVDQSTSCLAIAELEFGHHRHVSRAEKSWKLIASSLQRILGCNIELRITHVPHTFNSPKRLSFNIFSCARNIQESEIDYADHTSQKSMMKNTTLSSSSDCGSQEAPLKSYEGMDVITTLRSCEGNLLCSRERFLNRPSSLETLGASCSRVDSYNEEGHNGAHLVPYVPNSDNQSNCFPQTLWLQKKSPASHSSKLSFQGI 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04588 889 Pfam DNA polymerase III, delta subunit 286 443 - -
Vivi3g04588 889 MobiDBLite consensus disorder prediction 149 177 - -
Vivi3g04588 889 Gene3D - 444 506 - -
Vivi3g04588 889 Gene3D - 264 441 IPR027417 -
Vivi3g04588 889 FunFam DNA polymerase III subunit gamma/tau 444 506 - -
Vivi3g04588 889 NCBIfam DNA polymerase III subunit gamma/tau 271 613 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vivi3g04588 889 CDD HLD_clamp_pol_III_gamma_tau 443 506 IPR045085 -
Vivi3g04588 889 Gene3D - 507 617 - -
Vivi3g04588 889 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 274 699 - -
Vivi3g04588 889 MobiDBLite consensus disorder prediction 149 164 - -
Vivi3g04588 889 SUPERFAMILY post-AAA+ oligomerization domain-like 507 614 IPR008921 GO:0003677|GO:0006260
Vivi3g04588 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 492 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04588 Vivi-Chr3 83195317 83199742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04588 261 555 Core DNA Replication Machinery Family AT1G21690 23.529 2.95e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04588 - - tpra:123897029 1407.12