Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04587 ATGAATATTGGTTGGTCCAGTTTCACATTATTGGGAGGAGCTGGTAGTTTTTTCTTTACATTTTCTATTCTGGGTGAGAAAACCACAGTGATGTCACCAGAAGTGCTTGTCAGTGCAGGTGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTGGTGACATTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCAAACATAGCAACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCTATTCGAAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATCCCTGGAGGAATCAGTGCTGAACCACGGAGTTCTCGTCTTAAAGATAAAAAGAAGGGTGAAGGAGATTCTGTAGTCAAAGAACTATTTGTCCAAGACGTGTTACGAAACAATGATCTACTTCATGTACTCGGAAAAGAATCTTCTGTAGTACTTCTTCCTCGCAGTTCAGTTGACATTTCTATTTGCTCAAAATTACGCGTCGGATGCCAGCAACAAAAAGTGAACCCTGAATTTTCCATTAATGTATGCAATTCCAAGGGAATGAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTAAACAGAAATTGTGGAATTCTGCAAGAAAAAAATTTCCATTCCGTGAAAGACAAGTTTACTCTGTTGTGTGAAGGGAAGGGGATTTCCTCTTTTGATGCAAACGGTAACACATCCCCTTCAAGTACTAAGCAACTTCAAACAGGCAACAACTGTGAATCTAATCAAGGAGACGGGTTGTCAGATCAGAGACTGTTTTCGTGTGTCACATGTGGCCTATTAAACTTTTCCTGTGTTGCTATTGTACGTCCTAGCGAGCTAGCAGCTAGATATCTTATGTCTGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGATTCTGGAGTACCTAACAATAAACTAACTGTTGCTCACGAAGATGCAAATATTCCTGAGCCAAATATGCATACAGGGTGGACAAAGACAAATACCCAAGAGGCTGTAAATACTGAAGGAGGAAATGACAATACAGCTCTTGCATTATTGGCTTCGGCATATGCAAATTCTTCCGACTCTGAGGAAGATGCAATTGACGATCATAAATTGAATGCGATAAACTCTACATCTGAAAGTTTCCCTTCTAATGTTCAGGCTTCCCATGCTAATCCCATGACTAGACATGATAAAGATGATATTCTTTCAGAGAGCACCAGTTACGAAGCACATATATCTGAGGTTAATTTGAATCGGCCTCAAGAACAATCATTTGCGGAACAGAATTATAAAGTTACTTCAGAGGCTGCATTTGAAAATACAAGGCCAGTGCCTTATTCCATTTCATATAGTTCCCAAGATGCTAATAATGCTGAAAAGTCTTTGTCGGCCGAAGCCATGGTTGCTGTCAATCATAAAAATGCTTTATTGATACCACAATGTGATGAAGACTCAACTAGAATGCATGTATTCTGTCTAGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGGCCAATAGGTGGAGCCCATATAGTGCTCTTATGTCATCCAGATTATCCCAAGATAGAAGCTGAGGCAAAGTTGTGGGCAGAAGATTTGGGGATTGATTATTCATGGAAGAATATTGCCTACAGGCATGGCACCAAGGAAGATGAGGAGAGGATCCAAGCTGCTGTGGATAGTGAAGAAGCAATTCCCGGGAATGGGGACTGGGCTGTAAAGCTAGGAATAAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCTCTTTATAGCAAGCAGATGCCTTACAATCCTGTTATATATTATGCATTTGGTCGTAGCTCTCCAGCAAGCTCGCCCATAGAACCAAAGGTCTATCAGAGAAGGACTGACAGGCAGAAAAAGGTAGTTGCTGGCAAATGGTGTGGTAAAGTTTGGATGTCTAATCAGGTCCATGCCCTTTTAGCAAAAATGGATTCTGAAGATGTTGAGGATGAGGAAATTTTACATAGATTGATATCGCCTGATGTGAAAATTGAAAGATCGGGTAGTACCCCCAAAACTGAAACTGCTAGTACAAAATCGGGTAGGAAAAGGAAAATGTTCTTAAACAAAGGACAGACCAGGAAAGGAAGTTTTGTTGAAAAAGATATGGTTTTGGAAAATTCCACTGAAGATAAATCAAATAAATCAAATCCTCGGGAAAGGAGGATTCTTAGAAGCAAGCAAGCTAAGGGTGTTGAGAAAGATGGTGCAGCTTTGCACAGGGATTTTTCTCCATATCGTCGTAGAAAACCAATGAGCAAACAAAAAAATTGCACTGAAAGTGATGTAGTTTCTGATGATCAATTTATTGACAATGATGTGGTTTCAGATGATGCAGTGGACTATGATTCAGATTGTCATCAGATGGGAGAACTTAGAAGCAGTCAAGTTGAAGATACAGAGAGAGACTCAATTTCAGAGGATTCTTTGGATGTTGGTTCTCTTCAGTTGCAAATAGAGACTTCTAGAAGCAAGCATGCCAACTTCATTAGTGAAGACGATGCAATTTCTGATGACCAAATGGAGAATGGTTGTCAGAAGCAACGCAAGAGAATTCCTAAAAGCAGGAAAGGAAATTCCCTTGCTGAAAAAGATTCAGTGACATCTGATGACCAACTGGAGCTGAACATCCAGAAACAGCGCAGGGGTAATTCTAGAAGTAGGAAACTCAAATACCTCCATGAAGATGATATATCGGATAACCAAACAAATATCTATTGTCGCAAGTACCAAAGAAGAACAGTTAAAGTCAGGCAAGCCAAATGTGTAGCAAGGGAAGATGTAATGTCTGACGATCAATTGGATGATCCCTATCAAAAGCAGAAACCAAGAATTTCTAGAAGGAAAAACAAAGGCATTAATAGAGAATTTAAAAATGAAGTGTCCGATGACCAACAAGATGGCCACTTTCAGAAGCAGCAGCGAAAAATTCCGAAGAGCAGGATGCACACCATACAGACTGATGAAGACGTTATCGATGACTCGGCTGATGACAATGCCTGTCTGCTGCATAGAACTTCTAAAAGGAAGAAAGCTAAATTCAAGGATGAAGATGATATGAGTTTAGATAATGAAATAGAAGATGATTCTCTTCCGCAGCACAAAACTCTTCCAAGTAAACAATCCAAACCAAAGACACTTAAACAGATGAAACAATCCAAATCTTTCTCGATGAAAAACCAGACACCTCGGCCAGTGAAACGAGGGGCTCAGATGCTGATGAAATCAAAGGCTGCTCAGCAAGTAAAGCAGCCTTCTCATTTGCGAAATAAACAATCTGGTAACTCCAGAGAGCCTAGTTTAGATTTGGAAGAGGAGGATGTAGGTGGACCTAGCACATGCCTTAGAAAGAGACTCCCAAAAGCTCAGGAGTCTGAAGTAAAATCAAAAGACAAACAAACCAAAAGGAAAAGAACAAAGGATGCTACAGCAGCTACTCATGTTTCAGCTCGCAATGCCAAAACAGAGAACGAGGAAGCAGAATATCAGTGTGACATCGAGGGATGCACCATGAGTTTTGAGTCAAAACAGGAGCTGCTGCAGCATAAGAAAAATATCTGTCCAGTAAAAGGTTGCGGGAAAAAGTTCTTTTCACACAAATATCTGGTGCAGCACCGGCGAGTTCATGAAGATGACCGCCCGCTCAAGTGTCCCTGGAAGGGGTGCAAGATGTCTTTCAAGTGGGCATGGGCTCGAACTGAGCATATCCGAGTCCATACCGGTGCACGTCCTTATATATGTGCGGAACCAGGTTGTGCGCAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGGAAAACTGGTCATTTAACAAAGAAGAGTCGTCAATAA 3933 0.4096 MNIGWSSFTLLGGAGSFFFTFSILGEKTTVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGISAEPRSSRLKDKKKGEGDSVVKELFVQDVLRNNDLLHVLGKESSVVLLPRSSVDISICSKLRVGCQQQKVNPEFSINVCNSKGMNSSKGFVSDDLVLNRNCGILQEKNFHSVKDKFTLLCEGKGISSFDANGNTSPSSTKQLQTGNNCESNQGDGLSDQRLFSCVTCGLLNFSCVAIVRPSELAARYLMSADCSFFNDWVVDSGVPNNKLTVAHEDANIPEPNMHTGWTKTNTQEAVNTEGGNDNTALALLASAYANSSDSEEDAIDDHKLNAINSTSESFPSNVQASHANPMTRHDKDDILSESTSYEAHISEVNLNRPQEQSFAEQNYKVTSEAAFENTRPVPYSISYSSQDANNAEKSLSAEAMVAVNHKNALLIPQCDEDSTRMHVFCLEHAVEAEQQLRPIGGAHIVLLCHPDYPKIEAEAKLWAEDLGIDYSWKNIAYRHGTKEDEERIQAAVDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNPVIYYAFGRSSPASSPIEPKVYQRRTDRQKKVVAGKWCGKVWMSNQVHALLAKMDSEDVEDEEILHRLISPDVKIERSGSTPKTETASTKSGRKRKMFLNKGQTRKGSFVEKDMVLENSTEDKSNKSNPRERRILRSKQAKGVEKDGAALHRDFSPYRRRKPMSKQKNCTESDVVSDDQFIDNDVVSDDAVDYDSDCHQMGELRSSQVEDTERDSISEDSLDVGSLQLQIETSRSKHANFISEDDAISDDQMENGCQKQRKRIPKSRKGNSLAEKDSVTSDDQLELNIQKQRRGNSRSRKLKYLHEDDISDNQTNIYCRKYQRRTVKVRQAKCVAREDVMSDDQLDDPYQKQKPRISRRKNKGINREFKNEVSDDQQDGHFQKQQRKIPKSRMHTIQTDEDVIDDSADDNACLLHRTSKRKKAKFKDEDDMSLDNEIEDDSLPQHKTLPSKQSKPKTLKQMKQSKSFSMKNQTPRPVKRGAQMLMKSKAAQQVKQPSHLRNKQSGNSREPSLDLEEEDVGGPSTCLRKRLPKAQESEVKSKDKQTKRKRTKDATAATHVSARNAKTENEEAEYQCDIEGCTMSFESKQELLQHKKNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYICAEPGCAQTFRFVSDFSRHKRKTGHLTKKSRQ 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04587 1310 Gene3D Classic Zinc Finger 1215 1301 - -
Vivi3g04587 1310 ProSiteProfiles Zinc finger C2H2 type domain profile. 1277 1308 IPR013087 -
Vivi3g04587 1310 MobiDBLite consensus disorder prediction 727 771 - -
Vivi3g04587 1310 MobiDBLite consensus disorder prediction 963 1015 - -
Vivi3g04587 1310 ProSiteProfiles Zinc finger C2H2 type domain profile. 1247 1276 IPR013087 -
Vivi3g04587 1310 SUPERFAMILY Clavaminate synthase-like 24 108 - -
Vivi3g04587 1310 SUPERFAMILY beta-beta-alpha zinc fingers 1265 1299 IPR036236 -
Vivi3g04587 1310 MobiDBLite consensus disorder prediction 401 420 - -
Vivi3g04587 1310 MobiDBLite consensus disorder prediction 1151 1176 - -
Vivi3g04587 1310 ProSitePatterns Zinc finger C2H2 type domain signature. 1249 1271 IPR013087 -
Vivi3g04587 1310 Gene3D Cupin 16 113 - -
Vivi3g04587 1310 MobiDBLite consensus disorder prediction 1130 1144 - -
Vivi3g04587 1310 ProSiteProfiles JmjC domain profile. 1 94 IPR003347 -
Vivi3g04587 1310 MobiDBLite consensus disorder prediction 1109 1129 - -
Vivi3g04587 1310 MobiDBLite consensus disorder prediction 696 771 - -
Vivi3g04587 1310 ProSitePatterns Zinc finger C2H2 type domain signature. 1219 1241 IPR013087 -
Vivi3g04587 1310 MobiDBLite consensus disorder prediction 982 1006 - -
Vivi3g04587 1310 MobiDBLite consensus disorder prediction 1055 1179 - -
Vivi3g04587 1310 Pfam JmjC domain, hydroxylase 24 76 IPR003347 -
Vivi3g04587 1310 SMART c2h2final6 1277 1303 IPR013087 -
Vivi3g04587 1310 SMART c2h2final6 1247 1271 IPR013087 -
Vivi3g04587 1310 SMART c2h2final6 1194 1216 IPR013087 -
Vivi3g04587 1310 SMART c2h2final6 1217 1241 IPR013087 -
Vivi3g04587 1310 ProSiteProfiles Zinc finger C2H2 type domain profile. 1217 1246 IPR013087 -
Vivi3g04587 1310 FunFam Probable lysine-specific demethylase ELF6 1244 1273 - -
Vivi3g04587 1310 MobiDBLite consensus disorder prediction 888 902 - -
Vivi3g04587 1310 MobiDBLite consensus disorder prediction 862 904 - -
Vivi3g04587 1310 ProSitePatterns Zinc finger C2H2 type domain signature. 1279 1303 IPR013087 -
Vivi3g04587 1310 SUPERFAMILY beta-beta-alpha zinc fingers 1233 1275 IPR036236 -
Vivi3g04587 1310 PANTHER LYSINE-SPECIFIC DEMETHYLASE 24 1243 - -
Vivi3g04587 1310 MobiDBLite consensus disorder prediction 1067 1096 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04587 Vivi-Chr3 83178858 83186202 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04587 85 751 C2H2 Transcription Factor Family AT3G48430 44.428 1.72e-157 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi3g04587 JmjC 4.9e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04587 - - psat:127084261 2289.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04587 3 83178858 83186202 Vivi3g04587 3 83178858 83186202 ECH
Vivi3g04587 3 83178858 83186202 Vivi1g02248 1 47394929 47403707 PCT